Luteimonas fraxinea: LU699_03800
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Entry
LU699_03800 CDS
T09935
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lfx
Luteimonas fraxinea
Pathway
lfx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LU699_03800 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfx03021
]
LU699_03800 (rpoB)
03400 DNA repair and recombination proteins [BR:
lfx03400
]
LU699_03800 (rpoB)
Enzymes [BR:
lfx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LU699_03800 (rpoB)
Transcription machinery [BR:
lfx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LU699_03800 (rpoB)
DNA repair and recombination proteins [BR:
lfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LU699_03800 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
UHH10868
LinkDB
All DBs
Position
complement(866379..870566)
Genome browser
AA seq
1395 aa
AA seq
DB search
MTTSQLPSSQQQTYSFTEKKRIRKNFGKRREILEVPFLLAIQVDSYREFLQADRDPTKRE
DRGLHAALKSVFPIVSYNGYAALEYVGYKLGEPVFDERECRNRGLSYGAPLRVTVRLVIY
DRESSQKAIKYVKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTH
SSGKLLYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSVLLRALGYNNEEMLNEFF
DINSYHILPEGEGVQLELVSERLRGETLNFDLLDGEKVIVEAGKRITARHVKQLEAAGIT
ALAVPDDYMVGQILSHDVIDPATGELVATANDEITLETLEALRKASIETIGTIWVNDLDR
GPYLSNTLRIDSTKTQLDALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDVSGVGRM
KFNRRLGRKETEGASVLYDAKYFAERKDEDSVRLRGEFGQTSDILDVIRVLTEIRNGRGV
VDDIDHLGNRRVRSVGEMAENVFRVGLVRVERAVRERLTMAEADGLTPQELINAKPVAAA
VKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTI
ETPEGPNIGLINSLATFARTNRYGFLETPYRKVVDSRVTDDIEYLSAIEENDYVIAQANA
VQDDKGTMTQQFVDCRFQGESLLKPPAEIHYMDVSPMQTVSVAAALVPFLEHDDANRALM
GANMQRQAVPTLRAQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRVVVKVHEEEI
SGEHDAGVDIYNLIKYTRSNQNTCINQRPLVVVGDVVARGDVLADGPSTDIGELALGQNM
LVAFMPWNGYNFEDSILLSERVVKEDRYTTIHIEEMTAVARDTKLGPEEISADIPNVSEN
ALNRLDESGVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRV
PPGMDGTVIDVQVFTRDGIEKDKRAKQIEESEIKRVKKDFDDQFRILESAIYARLRSQIQ
GKVANGGPGLKKGDTVSSLVLDGLKKSDWFQIRMKDEDAADAIERAQKQIDAHQKEFEKR
FADKRGKITQGDDLAPGVLKMVKVYLAVKRRIQPGDKMAGRHGNKGVVSTIVPVQDMPHM
ANGNTVDIVLNPLGVPSRMNIGQILEVHLGLAAKGLGEKIQRMLDAQAKVAELRSFLDQI
YNHDKAVFAQRVDLSQFSDEELLKLAGNLTDGVPMATPVFDGAAESEIKAMLELADMPTS
GQHRLFDGRTGEAFEREVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGG
QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLV
KEIRSLAINMELEEH
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtcccagctcccgtcgagccagcagcagacctactcgttcaccgagaagaag
cgcatccgcaagaacttcggcaagcgccgcgagattctcgaggtgccgttcctcctggcc
atccaggtcgattcctaccgcgaattcctgcaggccgatcgcgatcccaccaagcgtgaa
gaccgtggtctgcacgccgcgctgaagtcggtgttcccgatcgtcagctacaacggctac
gccgcactcgaatacgtcggctacaagctcggcgagcccgtgttcgacgagcgcgaatgc
cgcaaccgtggcctgagctacggcgccccgctgcgcgtgaccgtgcgcctggtgatctat
gaccgcgagtcgtcgcagaaggccatcaagtacgtgaaggagcaggaggtctacatgggc
gagattccgctcatgaccgagaacggcaccttcatcatcaacggcaccgagcgcgtcatc
gtctcgcagctgcaccgctcgccgggtgtgttcttcgatcacgaccgcggcaagacgcac
agctcgggcaagctgctctacagcgcccgcatcattccgtaccgcggttcctggctcgac
ttcgagttcgacccgaaggacgcgctgttcacgcgtatcgatcgccgccgcaagctgccg
gtgtcggtgctgctgcgcgcgctcggctacaacaacgaagagatgctcaacgagttcttc
gacatcaacagctaccacatcctgccggaaggcgagggcgtgcagctggaactcgtgtcg
gagcgtctgcgtggcgaaacgctgaacttcgacctgctcgatggcgagaaggtcatcgtc
gaagccggcaagcgcatcaccgcgcgtcacgtcaagcagctcgaagccgcaggcatcacc
gcgctggccgtgccggacgactacatggtcggtcagatcctgtcgcacgacgtgatcgac
ccggcaacgggtgagctggtcgcgaccgcgaacgacgagatcacgctcgagactcttgaa
gcgctgcgcaaggcatcgatcgagaccatcggcacgatctgggtcaacgacctcgatcgc
ggtccgtacctgtcgaacaccctgcgcatcgactcgaccaagacgcagctcgatgcgttg
gtcgagatctaccgcatgatgcgtcccggcgagccgccgaccaaggatgccgcgcagaac
ctgttccacaatctgttcttcacgttcgagcgttacgacgtctccggcgtgggccgcatg
aagttcaaccgtcgcctgggccgcaaggaaaccgaaggcgcgtccgtgctgtacgacgcg
aagtacttcgccgagcgcaaggacgaggattccgtgcgtctgcgcggcgagttcggccag
acgtccgacatcctcgacgtcatccgcgtgctgaccgagatccgcaacggtcgcggcgtc
gtcgacgacatcgatcacctcggcaaccgccgtgtgcgttcggtcggtgaaatggccgag
aacgtgttccgcgtgggcctggtccgcgtcgagcgcgccgtgcgcgagcgcctgacgatg
gccgaggccgatggcctgaccccgcaggagctgatcaacgccaagccggtcgcggcggcg
gtcaaggaattcttcggctcctcgcagctgtcgcagttcatggaccagaacaacccgctg
tcggaagtcacgcacaagcgtcgcgtctcggccctcggcccgggcggtctgacccgcgag
cgcgccggcttcgaagtgcgcgacgtgcatcccacgcactacggccgcgtctgcaccatc
gaaacgccggaaggcccgaacatcggcctgatcaactcgctggcgaccttcgcacgcacc
aaccgttacggcttcctcgagacgccgtaccgcaaggtcgtcgacagccgcgtcaccgac
gacatcgagtacctctcggcgatcgaagagaacgactacgtcatcgcacaggccaacgcc
gtccaggacgacaagggcacgatgacgcagcagttcgtcgactgtcgcttccagggcgag
tcgctgctcaagccgccggcggaaatccattacatggacgtctcgccgatgcagaccgtg
tcggtcgccgccgcgctcgtgccgttcctcgagcacgatgacgcgaaccgcgcactgatg
ggcgccaacatgcagcgccaggccgtgccgacgctgcgtgcgcagaagccgctggtcggt
accggcatcgagcgcgccgtggcgcgcgactcgggcgtgaccgtgaacgcccgccgtggc
ggcgtgatcgagcagatcgatgccggtcgcgtcgtggtcaaggtgcatgaagaagagatc
tccggcgagcacgatgccggcgtcgacatctacaacctgatcaagtacacgcgttccaac
cagaacacctgcatcaaccagcgtccgctggtcgtcgtcggtgacgtggtcgcgcgcggc
gacgtgctggccgacggtccttcgaccgacatcggcgagctcgcgctgggccagaacatg
ctcgtcgcgttcatgccgtggaacggctacaacttcgaagactcgatcctgctgtcggag
cgcgtcgtcaaggaagaccgttacacgacgatccacatcgaggaaatgaccgcggtcgcc
cgcgacacgaagctgggaccggaggaaatctccgccgacatcccgaacgtgtccgagaac
gcgctcaaccgtctcgacgaatccggcgtggtgtacatcggtgcggaagtccgcgccggc
gacatcctggtcggcaaggtcacgccgaagggcgagagccagctgaccccggaagagaag
ctgctgcgtgcgatcttcggtgagaaggcgtccgacgtgaaggacagctcgttgcgcgtg
ccgccgggtatggacggcaccgtcatcgacgtgcaggtcttcacccgcgacggcatcgag
aaggacaagcgcgccaagcagatcgaagagtccgagatcaagcgcgtcaagaaggacttc
gacgaccagttccgcatcctcgaaagcgcgatctatgcgcgtctgcgttcgcagatccag
ggcaaggtcgccaacggcggtcccggcctgaagaagggcgacacggtcagctcgctggtg
ctcgacggcctgaagaagtccgactggttccagatccgcatgaaggacgaggacgcggcc
gacgcgatcgaacgtgcgcagaagcagatcgacgcgcaccagaaggagttcgagaagcgc
ttcgccgacaagcgcggcaagatcacccagggcgacgacctcgcaccgggcgtgctgaag
atggtcaaggtctatctggccgtgaagcgccgcatccagccgggcgacaagatggccggc
cgtcacggcaacaagggtgtcgtgtcgaccatcgtgcccgtgcaggacatgccgcacatg
gccaacggcaacacggtcgacatcgtgttgaacccgctgggcgtgccgtcgcgtatgaac
atcggccagatcctcgaagtgcacctgggcctcgcggccaaggggctcggcgagaagatc
cagcggatgctcgacgcgcaggccaaggtggccgaactgcgcagcttcctcgaccagatc
tacaaccacgacaaggccgtgttcgcacagcgcgtcgatctctcgcagttcagcgacgaa
gagctgctgaagctcgccggcaacctcaccgacggcgtgccgatggccaccccggtgttc
gacggcgcggcggagtcggagatcaaggcgatgctcgagctggcggacatgccgaccagc
ggtcagcaccgtctgttcgacggccgcaccggcgaggcgttcgagcgcgaagtgaccgtg
ggctacatgcacatgctcaagctcaaccacctcgtggacgacaagatgcacgcgcgttcg
accggtccgtactcgctcgtcacccagcagccgctgggcggcaaggcgcagttcggcggc
cagcgcttcggcgaaatggaagtctgggcgctggaagcctacggcgcggcctacaccctg
caggaaatgctgacggtgaagtccgacgacgtgcagggccgcaaccagatgtacaagaac
atcgtcgacggcgaacacgagatggtcgcgggcatgcccgagtccttcaacgtgctggtc
aaggaaatccgttcgctggcgatcaacatggagctggaggagcactga
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integrated database retrieval system
