Luteimonas fraxinea: LU699_08530
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Entry
LU699_08530 CDS
T09935
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lfx
Luteimonas fraxinea
Brite
KEGG Orthology (KO) [BR:
lfx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfx03019
]
LU699_08530 (hrpB)
Enzymes [BR:
lfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LU699_08530 (hrpB)
Messenger RNA biogenesis [BR:
lfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LU699_08530 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Motif
Other DBs
NCBI-ProteinID:
UHH11730
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All DBs
Position
1918925..1921477
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AA seq
850 aa
AA seq
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MRDVVSLCAVTHAASPVFPITSLLPEIVSSLAVHPRLVLEAPPGAGKTTQVPLALRDAAW
LGDRKIVMLEPRRVAARSAATFMARQLGDDVGGLVGYRIRFEQRISARTRIEVVTEGILT
RMLQDDPELGDVGALLFDEFHERHLAGDLGLALARDVQTGLREDLRLVVMSATLDGARIA
QWLDAPRLSSAGRSFPVDVSHVPPKRDEALEHQVRRVLVDALATQPGDALVFLPGQREIA
RCRAQLEAALPGDVELLVLHGELPVDAQTHVLQPSTDGRRRVVLATNVAESSVTLPGVRI
VVDSGQAREPRFDPNSGFSRLEIVSISQASADQRAGRAGRVASGVALRLWPESQRLEPQR
RPEIAQVDLAALALELAAWGDPSLAFPDPPPAGAMGAAHDLLQRLDALDTRGAITQTGRR
MLALGTHPRLAAMLLAGADAGERALACDLCALLEARDPLRPLPGTPRSDGVAARWQALAA
FRSGRTPADAQRGALAAIDAAAKQWRRRLKLDAAPPSSAPAHVFGDLLAHAFTDRIGYRH
ARDDARYTLSNGRMARLFDDSTLRGEQWIVASELRHETKDALLLRGAPVDEARLRRQWPE
RFTDADETRWDAERRALVGERVRRFDGIVLDARANGRVDPAQAAQALSDAVGALGLDVLP
WRDGLRQWQARVQAVRAWMPELALPDLSDAALRATRDAWLRPAFAGITRLDALGADALAD
ALQHQLDWSLRQQLDRMAPVRITVPSGMARAIDYAIEADGTPAPPVLAVKLQELFGLAKT
PTVADGRVPLTIHLLSPAGRPLQVTRDLAGFWERTYPEVRKEMKGRYPKHPWPEDPWNAP
ATHRAKPRGT
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgacgtcgttagcctgtgcgccgtgacgcacgccgcctctcccgtctttcccatc
acgtcgttgttgccggagatcgtctccagcctcgccgtgcatccgcgcctggtgctcgaa
gcgccgccgggcgcgggcaagaccacgcaggtgccgctggcgctgcgcgacgcggcgtgg
ctgggcgaccggaagatcgtgatgctggaaccgcggcgcgtcgccgcgcgttcggcagcg
acgttcatggcgcgccagctcggcgacgacgtcggcggcctcgtcggttatcgcatccgt
ttcgagcagcgcatcagcgcgcgcacgcggatcgaggtcgtcaccgaaggcatcctgacg
cggatgctgcaggacgatccggaactgggcgacgtcggcgcgctgctgttcgacgagttc
cacgagcgccatctcgccggcgatctcggcctcgcactcgcgcgtgacgtgcagaccggt
ctgcgcgaagacctgcgactggtggtgatgtcggcgacgctcgacggcgcgcgcatcgcg
cagtggctcgacgcgccgcgactgtcgagcgcgggccgcagctttccggtcgatgtctcg
cacgtaccgccgaagcgcgacgaggcgctcgaacaccaggtgcgccgtgtgctcgtcgat
gccctggcgacacagcccggcgatgcgctggtattcctgcccggccagcgcgagatcgca
cgctgtcgcgcccagctcgaagccgcgttgcccggcgatgtcgaactgctggtgttgcat
ggcgaactgccggtcgacgcgcagacgcatgtgctgcagccatcgaccgatggccgtcgt
cgtgtggtgctggccaccaacgtcgccgagagcagcgtgaccctgccgggcgtgcgcatc
gtcgtcgacagcggccaggcgcgcgagccgcgcttcgatcccaacagtggcttctcgcgt
ctggagatcgtgtccatctcgcaggcgtcggcggaccagcgcgcggggcgcgccgggcgt
gtcgcatcgggcgtggcgctgcgcctgtggccggaatcgcagcggctggagccgcagcgg
cgcccagagatcgcgcaggtcgatctcgccgcactcgcactcgaactcgccgcgtggggc
gatccctcgttggcatttccggatccaccgcccgccggcgcgatgggcgccgcgcacgat
ctgctgcagcgactcgatgcgctggatacgcgcggtgcgatcacgcagaccgggcgtcgc
atgctcgcgctcggcacgcatccacgcctcgcggcgatgctgctggccggcgcggatgcc
ggcgaacgcgcactggcctgcgatctgtgcgcgttgctggaagcgcgcgatccgctgcgg
ccactgccgggcacgccgcgctcggatggcgtggctgcgcgctggcaggcgcttgcggca
ttccgcagtggacgcacgccggccgatgcgcaacgcggcgcgctcgccgcgatcgatgcg
gccgccaaacaatggcgccgacgcctgaagctcgacgctgcgccgccgtcgtccgcaccg
gcgcacgtattcggcgatctgctcgcccatgcatttaccgatcgcatcggctatcgccac
gcgcgcgacgatgcgcgctacacgctcagcaacggccgcatggcccgcctgttcgacgac
agcaccttgcgcggcgaacagtggatcgtcgccagcgaattgcgccacgagaccaaggac
gcgctgttactgcgcggcgcgccggtcgacgaggcgcggctgcgtcggcaatggccggag
cgcttcaccgatgccgacgagacgcgctgggacgccgagcgtcgcgcgctggtcggcgag
cgcgtacgccgattcgacggcatcgtgctcgacgcacgtgcaaacggtcgcgtcgatccg
gcgcaggccgcgcaggcactgagcgatgcggtcggtgcgctcggcctcgatgtgctgccg
tggcgtgacggtctgcggcaatggcaggcgcgcgtgcaggcggtgcgcgcgtggatgccc
gaactcgcactgccggatctctcggatgcggcgctgcgggcgacgcgcgacgcgtggctg
cggcccgcgttcgccggcatcacccggctcgatgcactcggcgcggacgcactggccgat
gctttgcagcaccagctggactggtcactgcgccagcagctcgatcgcatggcgccggtg
cgcatcaccgtgccgtcgggcatggcgcgggcgatcgactacgcgatcgaggccgacggc
acgccagcgccgccggtgctcgcggtcaagctgcaggaactgttcggcctggcgaagacg
ccgaccgttgccgatggccgcgtgccgctgacgatccatctgctgtcgcccgcgggtcgc
ccgttgcaggtcacgcgcgacctcgctggcttctgggagcgcacgtatcccgaagtgcgc
aaggaaatgaaggggcgatatccgaagcatccttggccggaagatccgtggaatgcgcct
gcaacacatcgcgcgaaaccgcgcggcacctga
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