Lactobacillus gasseri ATCC 33323: LGAS_0285
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Entry
LGAS_0285 CDS
T00410
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lga
Lactobacillus gasseri ATCC 33323
Pathway
lga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LGAS_0285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lga03021
]
LGAS_0285
03400 DNA repair and recombination proteins [BR:
lga03400
]
LGAS_0285
Enzymes [BR:
lga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LGAS_0285
Transcription machinery [BR:
lga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LGAS_0285
DNA repair and recombination proteins [BR:
lga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LGAS_0285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ABJ59691
UniProt:
Q046D1
LinkDB
All DBs
Position
325155..328826
Genome browser
AA seq
1223 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGIRYRGIVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDI
SPRALEEVIYFAAYIVIDAGDTDLEDKQLLTEAEYREKKAKFGNRFEAKMGAEAVKELLE
QVDIDKEVHDLKEELKTATGQKRTRAIRRLDILDAFKNSGNKPSWMVMDCIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPRIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGLASNIKNAKRKIDREDDDIWDILEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFDSPAEAAIAYANGDIHYHTRIGLA
ADSMPEKPWPKGYEHGIFVTTYGKLVFNQIFPKDFFYINDPTQENLTHPVDERYFLQPGE
DIHEKLDNMKLGKAFKKGFLSDSIAQIYKDYKVQRTSDFLDDLKELGYTVCTTSGLTIGV
EDIPTITDKDDIVAEARKKVDVVSKQYRRGLITDEERHDRVISIWNNCKDIVQNEIAQIH
APRNPITIMADSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLSVLEMFMST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCGTDRGLTVHAITEGDEMIEPLF
DRLVGRYTSKSVYDPETHEVICPADVLMDEDMAHKIVDAGVTEVTIRSVFTCNTQHGVCK
KCYGMNLATGDDVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGAADITQGLPRVQEL
FEARNPKGRATISEVTGEITSIEEDPAEHTRQITVKGQTDTRTYDVPYTASVAVAEGDHV
VRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV
RILDPGETDILPGELMDIGEFKARNREVIISGGIPATAQSVILGITKAALETNSFLSAAS
FQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYREMEPKVDVPEDEKKKSV
YSIADIEKKLAAADAEKDKGSAD
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataagtttgaaagtatgcaaattggtttggcttctccaaacaagatc
agaagttggtcttatggcgaagttaaaaagccagaaactatcaactatcgtactttgaaa
ccagaaaaagatggtttgttcgatgaaagaattttcggaccaactaaggactggtcttgt
gcttgtggtaagtacaagggtattcgctatcgcggtattgtgtgtgaccggtgtggtgta
gaagttacttctgctaaagttagaagagaacgtatgggccacatcgaattagctgcacca
gtttcacatatctggtatttcaaaggtattccatctcgtatgggattagtgttagatatt
tcacctcgtgcacttgaagaagtaatatattttgctgcttatattgtaattgacgcaggt
gatactgatcttgaagataaacaacttcttacagaagctgaatatcgtgaaaagaaagca
aaattcggtaaccgttttgaagctaagatgggtgctgaagctgtaaaggaacttcttgaa
caagtagatattgacaaagaagttcatgatttaaaagaagaattaaagactgctactggt
caaaagagaactcgtgctatcagaagattagatatcttagatgcatttaagaattcaggt
aataagccttcatggatggttatggattgtattccagttattccgcctgatttaagacca
atggttcaacttgatggtggtcgtttcgcaacttctgatttgaatgatttatatagacgt
gtaattaatcgtaataatcgtttaaagagattgttagacttaaatgcacctagaattatc
gttcaaaatgaaaaacgtatgcttcaagaagctgtagatgcattaattgataacggtaga
cgtggtcgtccagttgtaggaccaggtaaccgtccacttaaatctctttctcatatgtta
aagggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgtcgactactcaggt
cgttcagttatcgatgtttcacctaagttgaagttttatcaatgtggtgttccacgtcca
atggctttagagttgtttaagccatttgtgatgcatgaattagtaaaacgtggtttagca
tctaacattaagaatgctaagcgcaagattgatcgtgaagatgacgatatctgggacatc
ttagaagatgtaattaaagaaagaccagttcttttgaaccgtgcacctactcttcaccgt
ttaggtatccaagcattcgagccagttttggtacctggtaaatcaattcgtcttcaccct
cttgcttgtgaagcctataacgccgacttcgatggtgaccagatggccattcacgttcca
ttatctgatgaagctgtagcagaatcacgtttgcttatgcttgctgctcaccatatcttg
gctcctaaggatggtaagccaattgttactccttctcaggatattgttttaggtaattac
tggttaactcaagcagaacgtggtcgcgaaggcgagggtatgatttttgactcaccagct
gaagcagctattgcatatgcaaatggtgatattcactaccatactcgcattggtttagca
gctgattcaatgcctgaaaagccatggccaaagggatatgaacacggaatttttgtaact
acctatggtaagttagtcttcaaccaaattttccctaaggatttcttctatattaatgat
cctactcaagaaaatcttacccatcccgtagatgaaagatatttcttgcaaccaggtgaa
gatatccatgaaaagctagataatatgaaacttggaaaggcctttaagaaaggtttctta
tcagattctattgctcaaatttacaaggattataaggttcaaagaacttctgatttcttg
gatgacttgaaggaattaggctacactgtatgtactacttctggtttgactattggtgtt
gaagatattcctacaattactgataaggacgatattgtggcagaagctcgtaagaaggtt
gacgtggtttctaagcaatatcgtcgtggtttgattactgatgaagaacgacatgatcga
gtgattagcatttggaataattgtaaagatattgttcaaaatgaaattgctcaaattcat
gctccaagaaacccaatcacaatcatggcagattccggtgctcgtggtaacatttctaac
tttacccagcttgctggtatgcgtggcttgatggctgctcctaacggaggaatgatggaa
attcctgttacatcaaacttccgtgaaggattatccgttttggaaatgttcatgtccact
cacggtgctcgtaaaggtatgaccgataccgcgttgaagactgctaactcaggttactta
actcgtcgtttggtagacgtagctcaagacgttattattcgtgaagaagattgtggtact
gatcgtggcttgactgttcatgcaattactgaaggcgatgaaatgattgaaccattattt
gatcgtctagtaggccgctatacttctaagagtgtctatgatccagaaactcatgaagtt
atctgcccagcagatgtcttgatggatgaagatatggctcataagattgttgatgctggc
gtcactgaagtaactattcgctccgtgtttacttgcaacactcaacacggtgtatgtaag
aaatgttatggtatgaaccttgctactggtgacgatgttgaagttggtgaagcagtaggt
actgttgctgctcaatctatcggtgaacctggtactcagttaactatgcgtaacttccac
aacggtggtgttgctggtgctgcagatattactcaaggtttacctcgtgttcaagaattg
tttgaagctcgtaaccctaagggacgtgcaacaatttctgaagtaactggtgaaataact
tcaattgaagaagatccagcagaacacactcgtcaaattactgtaaaaggtcaaacagat
actcgtacttatgatgtaccatatactgcatctgtagcagttgctgaaggtgaccatgtt
gtacgtggagataaattgactcttggttctatcgatcctaaagaattgattcgtgtacgt
gatgcattgactactgaaaaatacattctaagtgaaattcaaaaagcttatagaatgcag
ggtgtagaaattgctgataaacacgttgaagttatggcacgtcaaatgcttcaaaaggtt
cgtattcttgatccaggtgaaactgatatcttaccaggtgaattgatggatattggtgaa
tttaaggcaagaaaccgtgaagtaattatttctggtggtattcctgcaacagcacaaagt
gtaattcttggtattaccaaggccgctcttgaaactaacagtttcttgtctgcagcttca
ttccaggaaactactcgtgttcttactgatgcttctattcgtggaaagaacgatccatta
cttggtcttaaggaaaatgttattatcggtaagattattcctgccggtactggtatgcct
gtttaccgtgaaatggaacctaaggttgacgttcctgaagatgaaaagaaaaagtcagtt
tattctatagctgatattgagaagaaattagccgcagctgatgcagagaaagataaaggc
tcagctgactaa
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