Lactobacillus gasseri ATCC 33323: LGAS_0420
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Entry
LGAS_0420 CDS
T00410
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lga
Lactobacillus gasseri ATCC 33323
Brite
KEGG Orthology (KO) [BR:
lga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lga03019
]
LGAS_0420
03009 Ribosome biogenesis [BR:
lga03009
]
LGAS_0420
Enzymes [BR:
lga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LGAS_0420
Messenger RNA biogenesis [BR:
lga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGAS_0420
Ribosome biogenesis [BR:
lga03009
]
Prokaryotic type
rRNA helicases
LGAS_0420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
AAA_30
MGS
Motif
Other DBs
NCBI-ProteinID:
ABJ59825
UniProt:
A0A830PMB1
LinkDB
All DBs
Position
447330..448724
Genome browser
AA seq
464 aa
AA seq
DB search
MKNMAQTNSIFQSEKIRPELRAGLEKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKT
HAYLLPLLNMIDENAPVTQAVVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRN
RQIEKAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIIS
KLDKKVVLGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSRDKKEI
LYKLLTMGQPYLALVFANTKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQ
YQYVVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDEEMP
QIEDLEKLGIHFDFKEIKNGELVERTHYHRRDNRQARSHKLDNRMIGMVKKTKKKVKPGY
KKKIKQAIQKDRQQKRKIEERHQIRKAKRRRKREREQARGNFDN
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacatggcacaaacaaatagcatatttcaaagtgaaaagattagaccagaattg
cgagctggtctagaaaaaattaattttagcaaaccaactaaggttcaagctgcagtcatt
ccggctcttttaagtaataaaagtgttgtggttcaagcagcaactggttcaggtaagact
catgcctacctgctcccacttttgaacatgattgatgaaaatgccccagtaacgcaagca
gtagttaccgcacctagccgagagttagcaaatcaattgtataaggtagcgcgtcaatta
agggatgcgagtggtctaaatatttccattgaatatttgggcggtggtaatgatcgtaat
cgtcaaattgaaaaagctgaaaatagagctccacaattaattattgctacaccaggtcgt
ttacatgactttgcctcaaagaaagtcattaatttagataacgtcaaagccttcattatt
gatgaagcagacatgacgcttgatatgggctttttaagtcaaatggatgagatcatctct
aaactagataaaaaggtcgttttaggcgctttttcagctactatcccagttaagctagag
aactttctcagaaagtatatgtcaaagccagactttattgttattgataatccagcaatt
attgctcctacaattcaaaatgacttaattgatgttggttcaagagataaaaaagaaatt
ttatataagctcttaacgatgggacaaccatatttggccttagtttttgctaatactaaa
aagactgtcgacgaattaactaattatcttgaagaacaagggcttaaggtggctaagatc
cacggcgggattactgaacgtgagcgcaagcgtattattcgccaagttagagaagggcag
taccaatatgttgtagctagtgatttagccgctagaggaattgacgtaccaggagttagc
ttagtagttaactatgaaattcctaaggatcttgaatttgtcattcaccgaattgggaga
actggtcgaaatgggcttgaaggtcatgcaattaccttgatctatgatgaagagatgcct
caaattgaagacttagaaaagctaggtattcactttgactttaaagaaattaaaaatggt
gaattagttgaaagaacacactaccatcgtcgtgataatcgccaagctcggagtcataag
cttgataatcgcatgattggaatggttaagaagactaagaaaaaagtaaagcctggttat
aagaagaaaattaagcaagctattcaaaaagatcgccagcaaaagcgtaagatcgaagag
cgtcatcagattagaaaagctaaacgtagacgtaagcgtgaacgcgaacaagcacgcggt
aattttgacaactag
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