Lactobacillus gasseri ATCC 33323: LGAS_1003
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Entry
LGAS_1003 CDS
T00410
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lga
Lactobacillus gasseri ATCC 33323
Pathway
lga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGAS_1003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lga03019
]
LGAS_1003
03400 DNA repair and recombination proteins [BR:
lga03400
]
LGAS_1003
Enzymes [BR:
lga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGAS_1003
Messenger RNA biogenesis [BR:
lga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LGAS_1003
DNA repair and recombination proteins [BR:
lga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LGAS_1003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Receptor_IA-2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABJ60379
UniProt:
A0A805Z8D2
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All DBs
Position
1001528..1003321
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AA seq
597 aa
AA seq
DB search
MKSLQVLKDVFGYTTFRAGQEKVINLVLKGENVLAVMPTGAGKSLCYQIPALINPGLTLV
VSPLISLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYVTPERLAMNY
FRYQLNFLNVSLVAVDEAHCISQWGHDFRPAYRQIMDGVKSIKSNPNILALTATATPSVQ
KDIADQLQIPSANYVITSFARPNLSFKVVDNPKNTNLYLLDYIKQHPHESGIIYASTRKH
VEELTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKRNVRFV
IHANSTPNLESYYQEAGRAGRDGEACEGILIYHPKDIRLYRWFIEQSDLDDEYQKIQYQK
LAMITKYVNTTECLQQFIVSYFGQSCDPCGKCSNCLGTFIEKDITSESKSIISTIYELDG
RFGKTVVADVVSGANNQRMREIDAAHLKHYGSLKLGKTKILDLINYLISHNYLQLTDSQY
PLVHVTNLGWDVLDNKKRVTQKISKKRERLIQTSSQVSKEENDLFVRLKEIRLGLAKKQG
IPAFYIFSDKSLREMSLQKPETQADLLNISGVGQAKLKAYGQIMLVAIKNYLKEQTD
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattacaagtattaaaagatgtatttggctacacaacttttcgagcaggacaa
gaaaaagttattaatttggtgcttaaaggagaaaatgttctagcagtaatgccaactggt
gcaggcaaatcgctgtgttatcaaattcctgccttaattaaccctggtttaactttggta
gtttcacccttaatttcactaatgaaagaccaaattgattcattaaaacaaaatggtatt
aatgcggcagccctaaattcggcgactcctcaagaagaagtaaatccaattttaaggcaa
gcctatgaaggaaaaataaagctgctttatgtaactcctgagcgattagcaatgaattat
tttcgctatcagctgaacttcttaaatgtttcattagtcgcagtcgatgaagcacactgt
atttcacaatggggacatgattttcgaccagcttatcgccaaataatggatggcgtcaaa
tcaattaagagtaatccgaatattttagctttaactgcaacagcaaccccctcagttcaa
aaagacatcgctgaccaattgcagataccttctgccaattatgttattacttcatttgca
aggcccaatctaagcttcaaggtagtggataatcctaaaaatactaatttgtatctttta
gactatattaaacagcatccccatgaatctggaatcatatatgctagtacaagaaaacac
gttgaagaattaactgactatttggctcaaaatggcattttaacagctagttatcacgct
ggtctttctaataaagagagggcagatgtacaagatgcttttcaattcgataaagtacaa
gtaatagtggctactaatgcttttggaatgggaattgacaaaagaaatgttcgttttgtc
attcatgctaacagtacaccaaatttagaatcatattatcaagaagccggcagagcaggt
agagacggtgaagcttgtgaggggatattaatctatcaccctaaagatattcgactctat
cgctggtttattgaacaatctgatttagatgacgagtatcaaaaaatacaatatcaaaaa
ctagctatgattactaaatatgtaaataccacagagtgtttacaacagtttattgtcagc
tattttgggcaaagctgtgatccttgtggcaagtgttctaactgtttaggaacctttatt
gaaaaagacattacttcagaaagtaaaagtatcatttcaactatttatgaactggatggt
cgttttggtaagactgtggttgctgatgtagtttcaggagcaaataatcaacgcatgaga
gaaattgatgcagctcatctaaaacattatggtagtttaaagctgggaaagactaagatc
ctagatttaataaattatctaattagccataattatttacaactaactgatagtcagtat
ccattagttcatgtgactaatttaggatgggacgtcttagataataaaaagcgtgtaact
caaaaaatttctaaaaaaagagaaaggttaattcaaacttctagtcaagtttccaaagag
gaaaatgacctgtttgttagattaaaagaaattcgcttaggtttggctaaaaagcagggg
ataccagctttttatatcttttcagacaagtctttaagagaaatgtcactgcaaaagcct
gaaacacaagcagatcttttaaatatttcgggagtaggtcaagcaaagcttaaagcctat
ggtcaaattatgttagttgcaattaaaaattacttgaaagaacagacagactaa
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