Lactobacillus gasseri ATCC 33323: LGAS_1113
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Entry
LGAS_1113 CDS
T00410
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lga
Lactobacillus gasseri ATCC 33323
Brite
KEGG Orthology (KO) [BR:
lga00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LGAS_1113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lga03021
]
LGAS_1113
Transcription machinery [BR:
lga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LGAS_1113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
NDK
DUF2070
DUF2408
Motif
Other DBs
NCBI-ProteinID:
ABJ60485
UniProt:
A0A805YQH0
LinkDB
All DBs
Position
complement(1117703..1118824)
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AA seq
373 aa
AA seq
DB search
MAESKTTKKEATMTLDKKVKEVVKEVKKDKQITEKEFTAQLIKPYNLQGKAVDQLVQEFE
DNGISIVDEKGEPSKLALKKQKDVEKAELKDMSAPSSVRMNDPVRMYLKEIGRVSLLNAD
QEIALAKRIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKF
DYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPT
PEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEL
LKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR
HPSRSNQLKDFLD
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcagagagtaagactaccaaaaaagaagcaacaatgacacttgataagaaggtcaag
gaagttgttaaggaagttaaaaaagataaacaaatcactgaaaaagaatttactgctcaa
ctaattaagccatataatcttcaaggaaaagcggtagatcaacttgtacaagaatttgaa
gacaatggaattagtatcgttgatgaaaaaggcgaaccttctaaattagctttaaagaag
caaaaagatgttgaaaaagctgaattgaaagatatgtctgcaccttcaagcgtcagaatg
aacgatccggtgcggatgtacttgaaggaaattggacgtgtttcattgttgaatgcggat
caagaaattgctttagctaagcgaattgaagcaggcgatgaagaagctaaacaagaatta
gcagaagctaacttacgtttagttgtttctattgctaagcgttatgttggtcgtggaatg
tccttcttagacttaattcaagaaggtaacatgggcttaatgaaagctgttgacaagttt
gattatcgtttaggattcaaattttcaacttatgcgacttggtggattagacaagcaatt
actcgtgcaattgctgaccaagctagaactatccgtatcccagtgcacatggttgaaaca
atcaacaagttgattagaattcaaagacaacttttgcaagatttgggaagagaaccaact
ccggaagaaattggtgctgaaatggacatgccaactgataaggttcgtgaaatcttgaag
attgcacaagaacctgtttctcttgaaactccaattggtgaagaagatgattctcactta
ggtgactttatcgaagataaagatgcaactagtcctgaacaacatgcttcttatgaacta
ttgaaggaacaacttgaagaagttcttgatactttaactgaccgtgaagaaaatgtgttg
cgtttacgtttcggtctagatgatggacgtactcgtactcttgaagaagttggtaaggta
tttggagtaactcgtgagcgtatcagacagatcgaagctaaagctttgcggaagttacgt
cacccaagtcgttcaaaccaattaaaggatttcttagattaa
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