Lactobacillus gasseri ATCC 33323: LGAS_1184
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Entry
LGAS_1184 CDS
T00410
Name
(GenBank) RNase J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lga
Lactobacillus gasseri ATCC 33323
Pathway
lga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LGAS_1184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lga03019
]
LGAS_1184
Messenger RNA biogenesis [BR:
lga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LGAS_1184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
ODP
Motif
Other DBs
NCBI-ProteinID:
ABJ60553
UniProt:
A0A805YZM7
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All DBs
Position
1184359..1186038
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AA seq
559 aa
AA seq
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MKLKNNEVGVFAIGGLGEIGRNMYCVEYQDEIIIMDCGIKFPEDDMMGINYVISDYSYLV
KNRKKIKALVVTHGHEDHIGGIPYLLKKIPEIPVYATPFALALIRGKLDEHGILNSSELH
EEHEDTVLKFDKLSVSFFRTTHSIPDTLGIAVHTPEGAVVFTGDFKFDLTPVMSQPAPDF
QKMAKLGQEGVLALLSDSTNAEVPTFTKSERFVAHSLHDIITGIKGRIIFATFASNLYRV
STAIKAAVDTGRKVAIFGRSMENGVQNGIDLGYLNIPEGTLVDANEINHTPPEKAMILCT
GSQGEPLAALSRIADGTHRQISLQPGDTVIFSSNPIPGNTTSVNHLINKLTEAGANVVHG
KIHNVHTSGHAGQEEQKMMIELTKPEYFIPVHGEYRMQVVHTETAQSTGMAKDHTFVLKN
GDVLALTKDSSRIAGHINIPDVFVDTSGSDDVGNIVVRDRQILAEEGLVVVVATVDYKHQ
RVLAGPDILSRGFVYMRESTELISQAQKHVYHILKTEMAKDPQPKENEIRKAIIENLQDF
LYSKTERRPMILPMLIEKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattaaagaataacgaagtcggcgttttcgctatagggggtctaggcgaaatcggc
cgtaatatgtactgcgttgagtaccaagatgagattatcatcatggactgcggtattaaa
ttcccagaagatgacatgatgggaattaattatgttatctcagactattcttaccttgtt
aagaatagaaaaaaaatcaaagcattggttgtcactcacggacacgaagaccacattggt
gggattccttaccttttaaagaaaattcctgaaattccagtttatgcaactccatttgct
ctcgctctaattcgcggaaaacttgatgaacatggaattttaaattctagtgagcttcac
gaagagcatgaagatactgttttgaagtttgataagctttcagttagttttttcagaaca
actcactcaatccctgacactttgggaattgcagttcatactccagaaggtgcagttgtc
tttacgggagattttaagtttgacttaactcctgtaatgagtcaacctgcccctgacttt
cagaagatggccaagttaggtcaagaaggtgtactcgccctcctgtctgactcaactaat
gcggaagttccaacctttacaaaatcagaaagattcgttgctcattccttacacgatatc
atcactggaattaaaggtagaattatttttgcaacctttgcttctaacctttatcgtgtg
tcaaccgctattaaagcagctgttgacaccggaagaaaagttgcaatctttggtcgctca
atggaaaatggtgttcaaaatggtattgatcttggctatctaaatatcccagaaggaact
ttagtcgatgccaacgaaatcaaccatactccacctgaaaaagcaatgattttatgtact
ggttctcaaggagaaccacttgcagctctttcaagaattgcagatggaactcaccgtcaa
atttcattacaaccaggcgatacagtaatcttttcatctaaccctattccgggcaataca
accagtgttaaccacttaattaataagttaactgaagctggtgctaatgttgttcatggc
aagattcataatgtccacacttctggacacgctggtcaagaagaacaaaagatgatgatt
gagttaaccaagcctgaatacttcattcctgttcacggtgaatacagaatgcaagttgtt
catactgaaactgctcagtctactggcatggctaaagatcatacctttgttttaaaaaat
ggcgatgtacttgctttaactaaagattcttcaagaatcgctggtcacattaatatccca
gatgtctttgttgatacttctggtagtgatgatgttggaaatatcgtcgttcgtgaccgc
caaattttagctgaagaaggtcttgtggtagttgtagcaactgttgactacaagcaccaa
cgtgtcttagcaggaccagatattttaagtcgtggttttgtttacatgcgtgaatcaact
gagttgattagtcaagcacagaaacatgtctaccacattcttaagactgaaatggctaaa
gatccacaaccaaaagaaaatgaaattagaaaggcaattattgaaaatcttcaagatttc
ttatattcaaagactgaaagaagaccgatgattttgccaatgctaattgaaaagaaataa
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