Limosilactobacillus gastricus: LG045_07965
Help
Entry
LG045_07965 CDS
T07129
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lgas
Limosilactobacillus gastricus
Pathway
lgas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LG045_07965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgas03019
]
LG045_07965
03009 Ribosome biogenesis [BR:
lgas03009
]
LG045_07965
Enzymes [BR:
lgas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG045_07965
Messenger RNA biogenesis [BR:
lgas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LG045_07965
Ribosome biogenesis [BR:
lgas03009
]
Prokaryotic type
rRNA helicases
LG045_07965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF1087
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QGF40981
LinkDB
All DBs
Position
complement(1572969..1574465)
Genome browser
AA seq
498 aa
AA seq
DB search
MYFSELGLSNKLLKAVQRSGYEEATPIQEQTIPMVLKGLDVIGQAQTGTGKTAAFGLPVL
EHVDTQSSAIQALIISPTRELAIQTQEELYKLGKEKRARVQVVYGGADIRRQIKALKNGP
QIIVGTPGRLRDHLNRGTIKLDQLQTLVLDEADEMLNMGFLDDIEAIIQATPSDRQTLLF
SATMPPEIKRIGVQFMKDPQTVKIKAKELTTDLVDQYYIKARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMKRFKNGELDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGNHGVSLTFVTPNEMDYLHEIEKLTKV
RMLPLKPPTAEEAFRGQVASAFNDINELIERPDNDRYREAASELLATHEAVDLVATLLNE
LTKDDETQVPVKITPERPLPNRKRKPNRNGGNHYRRRSNGGNRRGDNRNRRPRGGNGSHR
NPRSQGKRNSFKIRRKED
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgtattttagtgaattaggtttatcaaataagttattaaaagcggttcaacgaagtggt
tatgaagaagccaccccgattcaagagcaaaccattccgatggttttgaagggactcgat
gtgatcggccaagctcaaaccgggactgggaagacggcggcctttgggttgccagtttta
gagcatgttgatacgcaatcatcagcaattcaagcgttgatcatttcgccaacccgggaa
ttagcgattcaaacccaagaagaattatataaattgggaaaggaaaaacgggcccgtgtc
caagttgtctacgggggcgctgatattcggcggcaaattaaagctttaaaaaatggtccc
caaattattgttgggacccccggccgtttgcgtgatcatttgaatcggggaacgatcaaa
ttggatcagttgcaaactttagtcttggatgaagccgatgagatgttaaatatgggcttc
ttggatgatattgaggcaatcattcaggcaacaccatcagatcgtcaaaccctcttgttc
tcagcaacaatgccacccgaaattaaacggattggggtccaatttatgaaggacccacaa
acggttaagattaaggcaaaggaattaactacggacttagttgatcaatactacattaag
gcccgtgattacgaaaaatttgatatcatgacgcggttaattgatgtccaagatcctgac
ctgaccattgtttttggtcgaacgaagcggcgggtggatgaattgtcgcgtggtttaatt
gctcggggctacaatgctgccggaattcatggtgatttgacacaagatcggcgctccaag
atcatgaaacgattcaagaatggcgaactagatattctagtcgccacagatgtagcggcc
cggggcttggatatttctggagttacgcatgtatacaactatgatattccacaagatccc
gaaagttatgttcaccggattggtcggacaggccgggccggcaaccatggtgtctcacta
acttttgtgacgccaaatgaaatggactatctccatgaaattgaaaagttgacgaaggtg
cggatgttgcctttaaaaccaccaacggctgaagaagcttttcggggacaggtggccagt
gcctttaatgatattaacgaactgattgaacgtccggacaacgatcgttatcgtgaagca
gcgagtgaactactcgctactcatgaagcggtggacttggtggcaaccttattaaatgag
ttaacgaaggatgatgagacccaagtgccggtcaagatcactccagaacgaccattacca
aatcggaaacggaaacctaaccggaatggtggtaatcactacaggcgccggtccaatggt
ggtaaccgtcgaggtgacaatcggaatcgacgtccacgtggtggtaatggtagtcatcgg
aatccacggagtcagggaaaacgtaattcatttaagattcggcgaaaagaggactaa
DBGET
integrated database retrieval system
