Leminorella grimontii: V8L73_09025
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Entry
V8L73_09025 CDS
T10343
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lgb Leminorella grimontii
Pathway
lgb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8L73_09025 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgb03019
]
V8L73_09025 (rne)
03009 Ribosome biogenesis [BR:
lgb03009
]
V8L73_09025 (rne)
Enzymes [BR:
lgb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
V8L73_09025 (rne)
Messenger RNA biogenesis [BR:
lgb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V8L73_09025 (rne)
Ribosome biogenesis [BR:
lgb03009
]
Prokaryotic type
rRNA processing factors
V8L73_09025 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
RecD_N
Motif
Other DBs
NCBI-ProteinID:
XBC27604
LinkDB
All DBs
Position
complement(1912422..1915613)
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEQSLEAAFVDY
GAERHGFLPFKEISREYFSSGVGGRPNIKDAVHVGQEVIVQVDKEERGNKGAALTTFISL
AGSYLVLMPNNPRAGGISRRIEGEDRQELKEALDSLEIPDGMGLIVRTAGVGKSAEALQW
DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNIKILDLAKE
HIAALGRPDFSSKIKPYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAI
DINSARSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENR
LRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHICPRCSGTGTVRDNESLSLS
ILRLIEEEALKDNTREVDAIVPVPIASYLLNEKREAINAIERRSGGKVRVVVVPNDNMET
PHYEVIRKKPGEESQVLSYMLPQLHESEIESEEEVYHERKAPEQPALASFSMPADSAPLE
ETKALPAPVSTAATAPAAPGLLSRLVSGLKNLLASPEPTKPVVEETKEKSSSERPDRRNN
RRSGGRKERGERTERTDRNSERQTREAGQESRRNNRQAQSQDAATEGSADNRRETRAERQ
RRRNEEKRQQQAVNQQNDAIVESAAEDAVAEEEKPVPTQRRQRRQMSQKVRTATQGERSA
DAVESTAAPVPPTEKEEIKLLHQANVAQENGVASENAEKNGFTNNGGENNGMPRRSRRSP
RHLRVSGQRRRRYRDEKYPTVSAMPLAAAVASPELASGKVFINYAAIAAAQAALQEDAVQ
AEVQSDVQEQVVVSSVIIAEGVQQPEVVESPIAEVAAIPAVEAVAAAPEVVEAVIQPSAE
PVEAEAEAVAVQQEETVHVQQESTPDVLTSIETPAPIRVETIQPASHAYGASASAPAAKP
VMPEETAEPVVQEAAPKPFEEPAVQAATVVEQTVREQNVSSAPAFKPAAVPMDDAEPAPV
AQAPVVSAVSTDASAQNAKGSAGGHSATSHAAAPAARPAPIDD
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcaacaggaagagttgcgcgttgctttagttgat
ggacagcgtttgtatgacttagatattgaaagtcctggccatgaacaaaaaaaggcaaat
atttacaaaggaaagatcacccgcgtagagcagagcctggaagcagcctttgttgactac
ggcgcagaacgtcacggtttcctcccctttaaagaaatttctcgcgaatacttttcctcc
ggcgtcggcggccgtcctaacattaaggatgccgttcacgtaggtcaggaagtcatcgtt
caggtcgataaagaagagcgcggcaataagggcgccgcgctgacaacctttatcagcctg
gcgggcagctatctggttctgatgccgaacaaccctcgcgccggcggcatctcccgtcgt
atcgaaggtgaagatcgccaagagcttaaggaagcgctggactcgctggaaattcctgac
ggcatggggcttatcgtccgtaccgccggcgttgggaaatccgccgaagcccttcagtgg
gatctctccttccgcttaaagcattgggaagccatcaagaaagcggccgaaagccgtcct
gctccattcctgattcaccaggagagcaacgtcatcgttcgcgctttccgcgattacctt
cgtcccgatatcggcgagatcctgatcgataacatcaaaattctcgacttggccaaagag
cacatcgctgcgctaggccgtccggacttcagcagcaagattaagccctataccggtgaa
atcccgctgtttagccattaccaaatcgaatcccagattgagtctgccttccagcgcgaa
gtgcgcctgccttccggcggctcaatcgttattgacaccaccgaggcgctgaccgccatc
gacatcaactccgctcgctctacccgcggcggcgatattgaagagacggcgttcaacacc
aacctcgaagccgcggacgaaattgcgcgtcagctgcgccttcgtgacctgggcggcctt
atcgtcatcgactttatcgacatgacgccggttcgccatcagcgtgaagtggaaaaccgc
ctgcgcgacgccgttcgtcaggaccgcgcccgcattcagattggccgcatttctcgcttt
ggcctgctggagatgtcccgccagcgcttgagcccgtcgctgggcgaatccagccatcat
atctgccctcgctgcagcggcaccggtacggttcgcgacaacgaatcgctctctctgtcc
atccttcgcctgattgaagaagaggcgctgaaggacaacaccagagaagtcgatgcgatt
gtccctgttcctatcgcctcttacctgcttaacgagaagcgcgaagccattaacgccatt
gaacgccgctccggcggtaaagtacgcgttgtggtcgttcccaacgacaacatggaaacg
ccgcactacgaagttatccgtaagaagccgggtgaagaaagccaggtgcttagctacatg
ctgcctcagctgcacgaaagtgaaatcgagtcggaagaggaagtttatcacgagcgaaaa
gcgcccgagcagcctgctctggccagtttctccatgcctgctgacagcgcgcctctagaa
gaaaccaaggctctgcctgctcccgtcagtacggctgcgacagcgcctgccgcaccaggg
ctgcttagccgccttgttagcggactgaagaacctgcttgcctctccggaaccgactaaa
ccggtagtcgaagagacaaaagaaaagtcttcatccgagaggccggatcgccgaaataat
cgccgcagcggcggacgtaaagagcgcggtgaacgtaccgagcgcactgaccgcaactcc
gagcgccaaactcgtgaagctggtcaggaatctcgccgcaataaccgtcaagcgcaaagt
caggatgccgcaactgaaggcagtgctgataaccgccgcgaaacccgcgccgagcgtcaa
cgtcgccgtaacgaagaaaaacgccaacagcaggctgtaaatcagcaaaacgacgccatc
gttgaaagcgcagcggaagacgccgtcgcagaagaagagaagcccgttccgacccagcgc
cgccagcgccgccagatgtcgcaaaaagttcgcactgcgactcagggcgaacgcagcgca
gacgccgtcgaaagtaccgctgcgccagtaccgccgaccgagaaagaagaaatcaagctt
ctgcatcaggctaacgtagctcaggaaaacggcgtcgcatcagaaaacgctgaaaagaat
ggctttaccaataacggcggtgaaaacaacggcatgcctcgtcgttctcgccgttcgcct
cgccacctgcgcgtcagcgggcagcgtcgccgtcgctatcgcgatgagaagtacccaacc
gtatcagcgatgcctttagctgctgccgttgcttctcccgagcttgcgtcaggtaaggtg
tttatcaactatgcggcaatcgccgccgctcaggccgccctacaggaagacgccgttcag
gctgaagttcagagcgacgttcaagagcaggtagtcgtttccagcgtcattatcgctgaa
ggcgtgcagcagccggaagtcgttgagtctccgatagctgaggtcgctgcgattccggcg
gtagaagccgtagcggcagcgcctgaagtggttgaagcagtgattcagccttccgctgag
ccggttgaggctgaagctgaagccgttgccgtacagcaggaagaaaccgttcacgttcaa
caagaatcaacgccggacgttctgacctcgattgaaacgcctgcgccgatccgcgtagaa
accattcaaccggctagccatgcctacggcgcgtccgcttctgcgcccgccgccaagcca
gtcatgccggaagaaacggctgaacccgtggttcaggaagcggctccaaagccgtttgaa
gagcccgcagttcaggctgctactgtggtagaacaaaccgtgcgcgagcaaaacgtctcc
agcgctccggcctttaagcctgctgctgtaccgatggacgacgcggagcccgctcccgta
gcgcaagcgcctgtcgtttctgccgtttcaaccgacgcctcggcgcagaacgccaaaggt
tctgcaggcggccattcggcaaccagccatgcggctgccccggcggcaaggcctgctccc
attgacgactaa
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