Leminorella grimontii: V8L73_16580
Help
Entry
V8L73_16580 CDS
T10343
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lgb Leminorella grimontii
Pathway
lgb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8L73_16580 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgb03019
]
V8L73_16580 (rnr)
03016 Transfer RNA biogenesis [BR:
lgb03016
]
V8L73_16580 (rnr)
Enzymes [BR:
lgb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V8L73_16580 (rnr)
Messenger RNA biogenesis [BR:
lgb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V8L73_16580 (rnr)
Transfer RNA biogenesis [BR:
lgb03016
]
Prokaryotic type
tRNA degradation factors
V8L73_16580 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
HTH_12
S1
Rho_RNA_bind
RNase_II_C_S1
LexA_DNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
XBC25361
LinkDB
All DBs
Position
complement(3563765..3566188)
Genome browser
AA seq
807 aa
AA seq
DB search
MNKDPFLAREMEKYDDPIPSREYILDLLSKRQAPASRDELVEALELKSEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDMVKGLVIGHRDGYGFLRVEGNKDDLYLSPEQMKMAMH
GDVILAQPMDLDRRGRREARVVRVLEPRSAQIVGRYFTDSGVGFVVPDDSRLNFDILIPP
ESIMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDKMGTSMAVDIALRTHEIPYVWPES
VLNEINGLKESVPEKAIKGRVDLRDLPLVTIDGEDARDFDDAVCCEKNRGGGWRLWVAIA
DVSYYVRPGTALDAEAHSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
KAGRLSSFKFYEAVMSSHARLTYTKVAHLLDGDQELREHYAPLVPMLEELHKLYRVLDGA
REQRGGISFETEEPKFIFNAERRIERIEPLVRNDAHKIIEECMILANISAARFVERAEEP
ALFRIHDKPKGENLTSLRSVLGELGLTLGGGLEPAPKDYAKLMDAVADRPDREMLQTMLL
RSMKQAVYDPENRGHFGLALDAYAHFTSPIRRYPDLSLHRAIKYLLAGSKGGMTSSGGWH
YAMEDMLQLGEHCSLTERRADEATRDVADWLKCDFMQDHVGEAFKGTISSVTAFGFFVRL
DDLYIDGLVHVSTLENDYYRFDNVGQRLIGESSGQTFRLGDKVEIRVDAVHMDERKIDFA
LVSSERRPRGEGKTEKEKAKRSARRSKSEGYAADTGVRVKPPRKPKVKNDEAGSDKASKG
KGKKPSAKTKKITAALKSKRAKKAAER
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagatcctttcctggctcgcgaaatggagaagtacgatgaccccatccccagc
cgcgaatacattctcgacctgctgtcaaaacggcaggcgcccgccagccgcgatgagctg
gtagaggcgttggaactaaaaagcgaagagcagcaggaagcgctgcgccgccgcctgcgg
gcgatggaacgcgacgggcagttggtgttcacaaggcgccagtgttatgcgctgcctgag
cggttggatatggtgaagggcctggtgattggccaccgtgacggttacggatttttgcgg
gtggagggcaacaaggacgacctttacctttcccctgaacagatgaagatggcgatgcac
ggcgacgtcattttggctcagccaatggacctcgatcgccgaggccgccgcgaggcgcgc
gtcgttcgagtgcttgagccgcgcagcgcgcagatcgtcggccgctactttaccgattca
ggcgtgggcttcgtcgtccctgacgacagccgcctgaacttcgatattttgatcccgccg
gaaagcatcatgggcgccagaatgggctacgtggtggtcgttgagctcactcagcgtccg
acgcggcgcaccaaggccatcggtaagatcgttgaagtgctcggcgacaagatgggcacc
tccatggcggtggacatcgcgcttagaacccacgagatcccttacgtctggcctgaatcc
gtgctcaatgaaatcaacggcctgaaggaaagcgtgccggaaaaagcaataaaggggcgc
gttgaccttcgcgacctgccgttagtgactatcgacggtgaggatgctcgtgactttgac
gacgcggtatgctgcgagaaaaatcgcggcggcggttggcgcctgtgggtggccatcgcc
gacgtaagctactacgtgcgccccggcaccgcgctggacgccgaagcgcacagccgaggc
aactcggtttacttcccgtcgcaggtgatcccaatgctgccggaggtgctgtccaacggg
ctgtgctcgctgaacccgcaggtagatcgcctgtgcatggtatgcgagatgaccatttcc
aaggccggtcgcctgagttcgttcaagttctatgaagcggtgatgagctcccatgcgcgc
ctgacctacaccaaagtggcccatctgctcgacggcgaccaggagcttcgcgaacactat
gcgccgctggtgccgatgctggaagagctgcataagctctaccgcgtgctggacggcgcc
cgcgagcagcggggcggcatctcgtttgaaacggaagagccgaagtttatttttaacgca
gagcggcgcatcgaacgcatcgagccgttggtgcgtaatgatgcccataagatcatcgaa
gaatgcatgattttggccaatatttccgccgcgcgctttgtcgagcgggcggaggaaccg
gcgctgttccgcattcacgataagcccaaaggcgaaaacctgacgtcgcttcgaagcgtc
ttgggcgaacttgggttgacgctgggcggcggcctcgagcctgcgcccaaggattacgcc
aagctgatggacgccgtagcggacaggcccgatcgcgaaatgctgcaaaccatgctgctg
cgctcgatgaagcaggcggtgtacgatccggaaaaccgcggtcacttcggcctggcgctg
gacgcctacgcgcactttacttcgccaatccgccgttatcccgacctgtcgctgcaccgg
gccatcaagtatctgttggcgggaagcaagggcggaatgacctccagcggcggctggcac
tatgcgatggaagacatgctgcagctcggcgaacactgttcgttgaccgagcgtcgcgcc
gatgaagcgacccgcgacgtggcggactggctgaagtgcgactttatgcaggatcacgtc
ggcgaagcgtttaaaggcacgatatccagcgtgaccgcctttggcttctttgtgcgcctt
gacgatctctatatcgacgggctggtgcacgtctctacgctggagaacgactactatcgg
ttcgataacgtcggccagcggctgattggcgagtcttccggtcagaccttccgcctgggc
gataaggttgaaatccgcgttgatgcggtgcatatggacgagcggaaaatcgactttgcg
ctggtttccagcgagcgtcgcccgcgcggcgaaggcaaaaccgaaaaagagaaggcgaag
cggtcagccagacgcagcaagtccgagggctacgccgccgataccggcgtgcgggtaaag
ccgccgagaaagccgaaggtcaaaaacgacgaagccggttcggacaaggcctcgaaggga
aagggcaagaagccgtcggccaagaccaaaaagattacggccgcgctgaagagcaaacgg
gcgaagaaggccgctgaacgttaa
DBGET
integrated database retrieval system
