KEGG   Leuconostoc gelidum JB7: C269_02105
Entry
C269_02105        CDS       T02322                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
lge  Leuconostoc gelidum JB7
Pathway
lge03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lge00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    C269_02105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lge03400]
    C269_02105
Enzymes [BR:lge01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     C269_02105
DNA repair and recombination proteins [BR:lge03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      C269_02105
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD CarD_TRCF_RID Helicase_C ResIII Cas3-like_C_2 UB2H RecG_dom3_C AAA_22
Other DBs
NCBI-ProteinID: AFS39866
LinkDB
Position
431024..434542
AA seq 1172 aa
MLTHFLAQSDTIKHLNEQATDGSSQLLLGVNGSARAASVAALYQENPRQMLVVTDTQVHA
DQLFSDLSSLMTNVFNFPAEESLATEIAISSPDLRLQRVASLLALRKGEAKVIVTSLAGV
ERLLPKPETVDAAKLSLTVGQTYQLNDIKKTLMMMGYTPTKLVQGAGEFAQRGSIIDIYP
LTSDEPIRLDFFDDELDQLKNFDVSTQKSTTVLKKYHVQPATDFIVSETQYDIAKQTIET
AFNNYRKELTGVAKKHATEGFSATQHVLNEHGRVNQLLPYATHFFEGETTLLDYFSDDVL
VFVDEFTRLKDMQIQQLTYDQEWLDKQLSAYQLIPGQVLRADFADLLTQNQSAVIYLANF
QRGLNNIKFTNIEEVTTRPANQYYGQIETLRTDLQYAQDAGMTVILLINDEKQSHHLSES
LSDFKVPIIETRQVQPNQAQIMKGNLAIGFEWPKLHLIVLTAHELFTQTRQVAPRQRKIN
NAERLKSYSELNVGDYVVHINHGIGRYEGLQTMTVDGGKQDYLSIAYQKNAKIFIPVTQL
NLIQKYIGASDAAKAPKLNKLGGVEWAKTKRQVAAKIEDIADDLLDLYAKREAQQGYAFP
PDDTEQLKFDMAFGYPETPDQIRSIEEIKVDMQKVRPMDRLLVGDVGFGKTEVALRAVFK
AVHAGKQVAFLAPTTILVQQHYETMLARFNDFPNIKIGVLSRFQTTAQNKFVIKQLNEHQ
IDIVVGTHRLLSKDVDFLDLGLLIIDEEQRFGVKHKERLKQLRHSVDVLTLTATPIPRTL
NMAMVGARDLSIIETPPANRYPIQTYVLEADWIIVRNAIEKELARGGQVFYLHNRVADID
RVASQIEDLVPSARVGAIHGQMSETQLESVLYDFLNGNYDVLVTTTIIETGVDIPNANTL
IVENADHMGLSQLYQLRGRVGRSARLAYAYFTYPFSRTPSEEAEKRLEAIRDFTELGSGF
RIAMRDLSIRGAGDILGKQQHGFIDSVGYDMYTKMLKDAVATKQGQTVTTSKPTETDAEL
ILGVLAYLPDTYVPDNAQKIELYTRIRQARTDKEFEEIETDMLDRFGDMPDEVARLLLVG
QIKQLADQAQVTNIRRQKQQLAIVFNSDATSTLAGEAIFETLANVPLKVAVRTETGNLQI
SITVNDVAESSIWLNILRDFLLVVITRQQVTK
NT seq 3519 nt   +upstreamnt  +downstreamnt
atgttaactcattttttagcgcaatcggatacaattaaacatcttaatgagcaagcgact
gatggttcttcacagttgcttttaggcgtcaatggtagtgcacgagctgcgagcgtcgca
gccttatatcaagaaaatccacgtcaaatgttagtcgttacagacacacaagtgcatgct
gatcaactattttcagatttatcaagtcttatgacaaatgtttttaattttcctgcagaa
gagtctttggcaacagaaattgctattagttcacctgacctacgattgcagcgagttgct
agtttattagccttgcgaaaaggcgaggctaaagttattgtgacaagtctagctggagtt
gaacgtttactacccaaaccagaaacagttgatgcggcgaaattgtcattgacagttggt
caaacttatcagttaaatgatatcaaaaaaaccttaatgatgatgggttatacacctaca
aaattagtgcaaggtgctggtgaatttgcacaacgtggttctattattgatatttaccca
ttgactagtgatgagcctattcgtttagacttttttgatgatgaattggaccaattgaaa
aattttgatgtatcgacacaaaaaagtacgactgtacttaaaaaatatcatgtgcagcca
gcgactgatttcattgtctcagagacgcagtatgatattgctaaacaaacgattgagacg
gcatttaataactatcgcaaagagctgactggtgttgcaaaaaaacatgcgacagaagga
ttttcagcaacacaacatgtgttaaatgagcatgggcgtgtgaaccaattattaccttat
gcgacccatttttttgagggtgaaacaactttattggattatttttcggatgatgttttg
gtctttgtggatgaattcacgcgattaaaagatatgcagatccaacagttaacttatgat
caagaatggttagacaagcagttgtcagcctatcaactcattcctggacaagtgttacgc
gcagactttgctgatctgttaacgcaaaatcaaagtgcggttatttatttagcaaatttt
caacgtggcttgaataacattaagttcaccaatattgaagaagtcactactcggccggct
aaccaatactatggtcaaattgagacacttagaactgatttacagtatgcacaagatgcg
ggtatgacggttattttattgattaacgatgaaaaacaaagccaccatctcagcgagtct
ttaagtgattttaaggtaccaattattgaaacccgtcaggttcaaccaaatcaggcgcag
ataatgaaaggcaacctggccataggatttgaatggcctaaattacatttaatcgtatta
acagcacatgaattgtttactcaaactcggcaagtggcgccaagacagcgtaaaattaat
aatgcggagcgtttaaagtcatatagtgaattaaatgttggtgactacgttgttcatatc
aatcatggtattggtcgttatgaaggtttacagacaatgacagttgatggtggtaaacaa
gattatttatctattgcctatcaaaaaaatgctaagatttttattccagtcacgcagttg
aatttaatccagaagtatattggtgcgtcagatgctgcaaaagcacctaaattaaataaa
ctcgggggtgttgaatgggctaaaactaagcgccaagtggcagcaaaaattgaagatatt
gctgatgatttattagatctttatgccaagcgtgaagcgcaacagggatatgcttttccg
ccagatgatacagaacaattgaaatttgacatggcatttggttatccagaaacaccagat
caaatccgctctattgaagaaattaaagttgacatgcaaaaagtgcgaccaatggatcgt
ctattagtaggggatgttggctttggcaaaacagaggtggccttgcgtgcagtttttaaa
gcagtacatgcgggaaaacaggtggcatttttagcaccaacaacaattttagtccaacaa
cattatgaaacgatgttagcacgcttcaatgattttccaaatattaaaattggcgtactg
agtcgtttccagacaactgcacaaaacaaatttgtgatcaaacaattaaatgaacatcaa
attgatattgttgttggcacacatcgcttgctgagtaaagatgttgattttttagatctt
ggtctgttaattattgatgaggaacaacgttttggggtaaaacataaggaacggctcaag
caattgcgtcatagcgttgatgtattaaccttaactgcaacaccgatcccacgaacattg
aatatggcgatggttggtgcgcgagatttatcaattattgaaacgcctccggccaatcgt
tatccgattcaaacctatgttctagaggcagattggataattgtgagaaatgccattgaa
aaggaacttgcccgtggtggtcaggtattttatttgcataatcgcgtagccgacattgat
cgtgttgctagtcaaatagaggatttagtgccatctgcacgtgttggtgccattcatgga
caaatgtctgaaacacagttagaaagtgttttatacgatttcttaaatggcaactatgat
gttttagtcacaacaacaattatcgaaacaggtgttgatattcccaatgcaaatacgtta
attgttgaaaacgcagatcatatgggtttgtcacaactatatcaactacgtggtcgtgtc
ggccgttcagctcgtttagcatacgcctactttacttatccgttttcaagaacaccaagt
gaagaagcggagaaacgtctagaagcgattcgtgattttacagaattgggttcaggattc
cgtattgccatgcgtgatttaagtattcgtggcgcaggtgatatactgggtaaacaacag
catgggttcatcgattcagttggttatgatatgtatacgaagatgttaaaagacgctgtt
gccacaaaacagggccaaacagtgacaacgagcaaaccaacagaaacagatgccgaatta
attcttggcgtactggcttacttaccagatacttatgtgcccgataatgcacaaaaaatt
gaattatatacacgtattcgtcaagcacgaacagataaagaatttgaagaaatcgaaact
gacatgcttgaccgttttggtgatatgccagatgaagtggctaggcttttgcttgttggt
caaatcaaacaactggctgatcaggcacaagtaacgaatataagacgacagaagcaacag
ttagcaatagtatttaattctgatgcgacgtcgacattagccggtgaagcaatttttgaa
acattggccaatgtgccattaaaggtggcggtgcgaacagagaccggtaatttacaaatt
agcataacagtcaatgatgtggctgagagtagtatttggttgaatattttacgtgatttt
ttgttggtcgtaatcacacgtcagcaagtaacgaaatga

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