Leopardus geoffroyi (Geoffroy's cat): 123575797
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Entry
123575797 CDS
T10761
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lgf04040
]
123575797 (SCN11A)
Ion channels [BR:
lgf04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
123575797 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
123575797
NCBI-ProteinID:
XP_045292476
LinkDB
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Position
C2:152070287..152166426
Genome browser
AA seq
1786 aa
AA seq
DB search
MKMDDRCYPVIFPDERNFRPFTSDTLATIEKRIAIQKEKKKCKDQTPAEPQPRPQLDLKV
SRKLPKLYGNIPRELIARPLEDLDPFYRNHKTFMVLNKKRTIYRFSANRALFIFGPFNPI
RSLAIRISVHSLFSMFIICTVIINCVFMATACGKDNSNIYTDNAEYVFTGIYIFEALIKI
LARGFVLDEFSFLRDPWNWLDSIVIATAFVSYSPSIRASGISLSSLRTFRVFRALKAISV
VSGLKVIVGALLRSVKKLVDVMILTLFCLSIFALVGQQLFKENLNQRCVRKDCKDMDNLD
DHCFEKKDSTEFRICGSWMGESACSEQFQCNHTKRNPDYNYTNFDNFGWSFLSMFRLITQ
DSWEKLYQQTLRTSGLFSVFFFVVVIFLGSFYLINLTLAVVTMAYEEQNRNVAAETEAKE
KMFQEAQRLLKEEKEALVAMGIDRSSLNSLEASSFSPKKRKLFGNRKRKSFFLRDSGKDQ
PPESDSDEDSTKKPHILEQTKRLSQNLSVDFCDEHGDPFQRQRALSAVSILTITMQEQEK
SQEPCLPCGGNVASRYLVWNCSPQWLCIKKTLRVVMTDPFTELVITICIVINTVFLALEH
YKMDQSFEYMLYTGNLVFTGIFMAEMCLKIIALDPYNYFRRGWNIFDSIVALLSFADVMN
SVVVGKQSPLFFHSLRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLAIVVFIFSV
VGMQLFGSKFNSVRNNTKSCGPTVPCLRRWHMGDFYRSFLVVFRILCGEWIENMWECMQE
TSKPLCVVVFLLIMVIGKLVVLNLFIALLLNSFSNEERDGSLDGEAKKTKVQLALDRFHW
AFCFVIHTLARFCHTWCRRQTLPQQKEVSGDPPAKSKDIIPLVAGVKRGSETWEEFGVVT
SAPKTLSVEHDRTWLAPLAEEEDDFESSGKINAQCVAPPEAGKQAYELPQETKTSTSPGA
QSVEIDVFSEGDIYLSAQNPRKKSDTTSVFSECSTIDPLDPFARVPEMVPKKEPERCFPK
GLGHCFPCCATDKRKSHWIIWWNLRKTCYQIVKHSWFESFVIFVILLSSGALVFEDIHLE
KRPNIQALLNCTDHIFTYIFILEMGLKWVAFGFGKYFTSVWCWLDFIIVIVSVTSLIDLK
SLKSFRTLRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCILGVNFFS
GKFGRCINVSDTNSVINYSVVANQSQCESGNFSWVTPPVNFDNVGMAYLALLQVATFKGW
MDIMYAAVDSRGKELQPGFEENPQNYLFFVAFIIFGSFFTLNLFIGVIIDNFNQQQKKLG
GEDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKCQGLAFDLVTNQVFDVIIIILIFLN
MVIMMAESNNHPEDTKAILEDLNLAFVVIFTIECLIKIFALRQYYFTNGWNLFDCVIVVL
SIVSAMVSALENQQHIPFPPTLFRVVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFN
IGLLLFLVMFIYAIFGMNCFCKVKEGFGIDDIFNFKTFVGSILCLFQITTSAGWDALLRP
MLQSNDSCNPNLDSRHLPAIAIAYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLG
EDDFEIFYEVWEKFDPEATQFIKYPALSDFADALPEPLRVAKPNRFQFLMMDLPMVSGDR
LHCLDILFAFTTRVLGDSSGLDSMKAMMEEKFMEANPSKKLYEPIVTTTKRKEEERCAAV
IQKAFRKYKLKMSMCALEDGPRSPLQTLCNGDLSSSGVAEGKVHYD
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggatgacaggtgctacccggtgatctttccagatgaacgaaatttccgtccc
ttcacttcggacaccctggctacaattgagaagcggattgccatccaaaaggagaaaaag
aagtgcaaagaccagacaccggcagaaccccagcctcggcctcagcttgacctaaaggtc
tccaggaagttgcccaaactctatggcaacattccccgtgagctgatagcaaggcccctg
gaagacttggacccgttctacagaaatcataagacgtttatggtgttgaacaaaaagagg
accatctatcgcttcagtgccaatcgtgccttgttcatatttgggcctttcaatccaatc
cgaagtttagccattaggatctcagtccattcattgttcagcatgttcatcatctgcacc
gtcatcatcaactgcgtgttcatggccaccgcctgtgggaaggacaacagcaacatatat
accgacaatgccgagtatgtcttcactgggatttatatttttgaagctttgataaaaata
ttggcaagaggttttgttctggatgagttttcttttctccgagatccatggaactggctg
gactccattgtcattgcaacagcgtttgtatcatactcaccaagtatcagggccagtggc
atcagtctgtcgtccctacgtaccttccgggtgttcagagctttgaaagcaatttcggtg
gtttcaggtctgaaggtcatcgttggggccttgctgcgctctgtgaagaagcttgttgac
gtgatgatcctgactctcttttgcctcagcatcttcgccctggtaggtcagcagctcttt
aaggaaaatctgaaccagagatgtgtcaggaaggactgtaaggatatggataaccttgac
gaccattgctttgaaaagaaagattccactgaattcagaatatgtggcagctggatgggt
gaaagtgcctgttctgaacaatttcagtgcaaccacaccaaaaggaatcctgactataat
tataccaattttgacaactttggctggtcttttctgtccatgtttcggctgataacccaa
gattcctgggagaagctttatcaacagaccttgcgtacctcagggcttttctcagtcttc
ttcttcgtggtggtcatcttcctgggctccttctacctgattaacttaaccctggctgtt
gtcaccatggcttacgaagagcagaacagaaacgtagctgccgagaccgaggccaaggag
aagatgttccaggaagcccagcggctgctgaaggaggaaaaggaggctctggttgccatg
ggaattgacagaagttcacttaattcccttgaggcatcatctttttccccaaagaagaga
aagctatttggtaacaggaaacgaaagtccttttttttgagagactctgggaaagaccag
cctccagaatcagattctgatgaagattccacgaaaaagccacacatcctagagcaaacc
aaacggctgtcccagaatctgtcagtggatttctgtgatgagcacggggaccccttccaa
aggcagagggccctgagtgctgtcagcatcctcaccatcaccatgcaggagcaagaaaag
tcacaggagccttgcctcccatgtgggggaaacgtggcgtccagatacctcgtgtggaac
tgcagcccccagtggctgtgcattaagaagaccctgcgagtcgtgatgaccgaccccttt
actgagctggtcatcaccatctgcatcgtaatcaacactgtcttcttggccttggagcat
tacaaaatggaccagagttttgagtatatgttgtatacggggaatttggttttcactggc
attttcatggcagaaatgtgcctaaaaatcatcgcgctcgatccctacaactacttccgc
cgaggctggaacatttttgacagcatcgtcgctcttctgagttttgcagatgtgatgaac
agtgtggttgtaggaaagcaaagtcctctgtttttccattccttaagagtgctaagggtt
ttcaagttagccaaatcctggccaactttaaatacactgataaagataattggtcactcc
gtcggagccctgggaaacctgactgtggtcctggccattgtggtcttcattttctccgta
gttggcatgcagcttttcggctctaaattcaattctgtaaggaataacaccaaatcctgt
ggccctacagtcccatgtttacgacgctggcacatgggggacttctaccgttcctttctg
gtggtattccgcatcctctgtggggaatggatcgaaaacatgtgggaatgtatgcaagaa
accagtaaaccgctgtgcgtcgtcgtctttctgttgatcatggtgataggaaaactcgtg
gtactcaacctcttcattgccttgctgctcaattccttcagtaatgaggagagggatgga
agcttggatggagaggccaaaaaaaccaaagtccagttagccctggatcggttccactgg
gctttttgctttgtaatccatactcttgcgcgtttttgtcacacgtggtgcaggaggcaa
acgttaccgcagcaaaaagaggtgtcgggggaccctcctgccaaaagcaaagacatcatt
ccactggtcgcaggggtgaaaaggggctcggagacctgggaggagttcggtgtagtcacg
tctgcaccaaagaccttgagtgtagagcatgaccggacttggttggccccacttgcagag
gaagaggatgattttgaatcttcaggcaaaatcaatgcacagtgcgttgcaccacctgag
gctggaaaacaggcctatgaactccctcaggagaccaagacgtctaccagcccaggagct
caaagtgtggaaattgatgtgttctctgaaggtgacatttatctgtcagcacagaacccc
cgaaagaagtctgacactaccagcgttttctcagaatgtagcaccattgatccactggat
ccttttgcaagggtaccggaaatggttcccaaaaaagaaccagagagatgttttcccaaa
ggcctgggtcactgcttcccatgctgtgccacggacaagagaaagtcccactggatcatt
tggtggaacctgcggaaaacctgctaccaaatagtgaaacacagttggtttgagagcttt
gttatctttgtgattctgctgagcagtggggcactggtatttgaagatattcaccttgag
aaacgacccaatatccaagcattacttaattgtactgaccatattttcacatacattttt
atcctggagatgggtctaaaatgggtagcctttggatttgggaagtatttcaccagtgtc
tggtgctggcttgacttcatcattgtaattgtctctgtgaccagtctcatcgacctaaag
agcttgaagtccttcaggactctacgagcactgaggcccctgcgcgcactgtcccagttt
gaaggaatgaaggtggtcgtcaatgctctcataggtgccatacctgccattctgaatgtt
ttgcttgtctgcctcattttctggctcatattttgtatcctgggagtaaacttcttctct
ggaaaatttggaagatgcattaatgtatcagatacaaactcagttataaattacagcgtt
gttgcaaaccaaagtcaatgcgaaagtggaaatttctcttgggtcaccccgccggtcaac
tttgacaatgtgggaatggcttaccttgccctcttgcaagtggcaacatttaagggctgg
atggatatcatgtacgcagctgtcgattccagagggaaagaactacagccagggtttgag
gagaacccacaaaactaccttttcttcgtggcttttatcatctttggctcattctttact
ctgaatctcttcatcggtgttattattgacaacttcaaccaacagcagaaaaagttaggt
ggtgaagatatttttatgacagaagaacagaagaaatactataatgcaatgaaaaaatta
ggatccaaaaaacctcaaaagcccattccgagacctctgaataaatgccagggtctcgcg
ttcgacctggtcacaaaccaggtctttgacgtcatcatcatcatcctcattttcctcaac
atggttatcatgatggctgaatcaaataaccatcccgaagacacaaaagccatccttgag
gatctcaacctggcctttgtggtcatctttacaattgagtgtctcatcaaaatctttgct
ttgaggcaatactacttcaccaatggctggaacttattcgactgtgtgatcgtggttctc
tctattgttagtgccatggtttctgccttggagaaccagcagcacattcccttccctcca
acgctcttcagagttgtgcgcttggctcggattggtcggatcctgagacttgttcgggca
gcacgaggaattagaaccctcctttttgctctgatgatgtcccttccctctctattcaac
atcggtcttctgctttttctggttatgtttatctatgccatttttggtatgaactgcttt
tgcaaagtgaaggaagggtttggaattgatgacatattcaacttcaagacttttgttggc
agcatactctgtctcttccagatcaccacctcggcaggctgggatgccctcctcaggccc
atgctgcaatcaaatgattcatgcaaccccaacttagacagccgtcacctccctgccata
gccatagcctactttgttagttacatcatcatttccttcctcattgttgtcaacatgtac
attgctgtgatcttagagaacttcaatactgccactgaagaaagtgaggaccctttgggt
gaagatgactttgaaatattctatgaagtctgggaaaagtttgacccagaagcaacacag
tttatcaagtatcctgccctttctgactttgctgatgcccttcctgagcctttacgggtg
gcaaagccaaatagattccagttcctaatgatggacttgcccatggtgagtggagatcgc
ctccactgcctggatattctcttcgcgttcaccactagggtacttggtgactccagcggc
ctggacagcatgaaagcaatgatggaggagaagttcatggaggccaacccttccaagaag
ttgtatgaacccatagtcaccaccaccaagaggaaggaagaggaaagatgtgctgctgtt
attcaaaaggcctttcgaaaatacaagctgaagatgtccatgtgtgccttagaagacggg
cctcgttcaccactccagacactctgcaatggagacctctccagctccggggtggccgag
ggcaaggtccactacgactga
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