Leopardus geoffroyi (Geoffroy's cat): 123577025
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Entry
123577025 CDS
T10761
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
Ribosome biogenesis [BR:
lgf03009
]
Eukaryotic type
90S particles
Other 90S particles
123577025 (PDCD11)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
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NCBI-GeneID:
123577025
NCBI-ProteinID:
XP_045294725
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Position
D2:62100474..62143800
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AA seq
1871 aa
AA seq
DB search
MEESFPRGGTRKTHKSEKAFQQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKIEKRE
NSKSIREKFEILSIESLCEGMRILGCVKEVNELELVVSLPNGLKGFVQVTEICDAYTKKL
SEQVAQEEPLKDLAHLPELFSPGMLVRCVVSSVGFTERGKKSVKLSLNPKNVNEVLSAEA
LKPGMLLTGTVSSLEDHGYLVDIGVGGARAFLPLQKAQEYIRQKNKGAELKVGHYLNCVI
EEVKGNGGVVGLSIGHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPHGLILNFLSF
FTGLVDFMHLDPKKAGTYFSNQTVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQH
LGAVLEDVPVQSFSSKAGATFRLKDGALAYARLSHLSDSKNVFNAEAFKPGNTHKCRIID
YSQMDELALLSLRTSVIEAQYLRYHDIKPGALVKGTVLTIKPYGMLVKVGEQIRGLVPPI
HLADILIKNPEKKYHIGDEVTCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGL
QTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVAVLNCEPSK
ERMLLSFKLLGDPKREHTGHSQKKRRAVSVGQLVDVKVLEKTKDGLEVAVLPHNVPAFLP
IPHLSDHVANGPLLYHWLQAGDILHRVLCLSQSEGHVLLCRKPALVSTVEGGQDPKSFSE
IHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTN
VDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSSRDSVLIQTLAEMIP
GMVLDLEVQEVLEDGSVVFSEGPVPGLVLRASRYHRAGQEVEPGQKKKAVILNIDMLKLE
VHVSLCHDLVNRKAKKLKKGSEYQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRF
DSEKLQVGQGVSLTLKTTEPGVTGFLLAVEGPATKRTVRQTRKDSETVDEDEEADPALVV
GAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVG
KTVTARVIGGRDMKTFKFLPISHPRFIRTIPELSVRPSELEKDGCTALNTHTVSPLEKIK
QYQAGQTVICFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALK
ATVVGPDSSKAFLCLSLIGPHKLEKGEVAMGRVVKVTPKEGLTVSFPFGKMGTVSIFHVS
DSYSEMPLEDFIPQKVVRCYILSATDHVLTLSLRSSRTNPETKSKITDAEINSIQDIQEG
QLLRGYVKSVQPHGVLFGLGPSVVGLAQYPHVSQYSPSKKALYNRYLPEGKLLTAKVLSL
NRQKNLVELSFLPGDTGKPDVFPASLGLPLLKQEERKMEAEEQEHKGEEEQKKKNQKRKG
KKNEEGQEAVRPPGKEKSESQKPQAKKQGKRPRREPASEQEGVKKKQKKAAPSEEDDSGV
EVYYREGEEEVEERSVLPKGKPTRPAEVPRLQLSSGFIWDVGLDSLTPALPPRGESSDSE
EDDKPQQSTQKRSKKERMLEKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSSI
LWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSPESLTKV
FERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKSVWIKYGAFLLRRGQ
AGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSV
YIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALE
YVEAKSSVLED
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagcttcccccgagggggtacaagaaagacccacaaatcagagaaagctttc
cagcagtcggttgaacaagacaacttatttgatatttctactgaagaggaatctaccaaa
aggaaaaagagccagaaagggccagcaaaaacaaaaaagttgaaaatcgaaaagagagaa
aacagcaagtctataagagagaagtttgaaatccttagtattgagtccctgtgtgagggg
atgcggattttgggttgtgtgaaagaggtaaatgaactggaactggtggtgagtctcccc
aatggcctcaagggctttgtgcaagtgactgaaatctgtgatgcttacaccaaaaagctg
agtgagcaggtggctcaagaagaacctctgaaggacctggcccacttgcctgaactcttc
tcacctgggatgctggtgaggtgtgtggtgagcagtgtgggcttcacagaaaggggaaaa
aagagtgtcaagctatctctgaaccccaaaaatgtcaacgaagtgttatctgctgaggcc
ctgaagcccggcatgctgctcacaggcactgtgtccagcctggaagaccacggctaccta
gtggacattggtgttggtggggccagagctttcctgccactgcagaaagcccaggaatat
atccgacagaagaacaaaggtgctgaactgaaggtgggtcattatctgaactgcgttatt
gaagaggtgaaaggtaacggaggagttgttggtctatctattggtcattctgaagtttct
accgccattgctactgaggagcaaaactggacccttaataacttgctaccaggactggtg
gtcaaagcccaggtacagaaggtgactccacatggccttatattgaacttcctctcattc
ttcactggcctggttgactttatgcacttggatcccaagaaagctggaacatacttctca
aaccaaacagtaagggcctgtgttctctgtgtccatcctcggaccagggctgtgaggctg
agcctgcgccccatcttcctgcagcctgggcgctcactcacccggctctcctgccagcac
ctgggagcagtgctggaggatgttcctgtccagagcttttccagcaaggctggggccacc
ttcaggctgaaggatggggctctggcctatgcccggctcagccatctctccgattctaag
aacgtcttcaatgccgaggccttcaagccagggaacacccacaagtgtagaatcatcgat
tacagccaaatggatgaactggctttgctctctctgaggacatctgttattgaagctcaa
taccttaggtaccatgacatcaaacctggggcattggtaaagggcacggtgctgaccata
aagccatatgggatgctggtgaaagtgggcgaacaaatcaggggcctggtacctccaata
cacctggccgacatcctgataaagaatccagagaagaaataccacattggggatgaggtc
acgtgccgggttttgctttgtgatcccgaagccaagaagttgatgatgaccctgaagaaa
accctgattgagtccaaactgcctgccattacctgctatgccgatgccaagccgggtctg
cagacacacggcttcatcctcagagtcaaggactatggctgcattgtgaagttctacaat
gatgtgcagggtctagtgcccaagcacgagctcagtgctgagtatgtccctgacccagag
agggtcttttacactggccaggtggtgaaggttgcggtgctgaactgtgagccatctaaa
gagaggatgctcttgtccttcaagctgctgggtgatccaaagagagagcatacgggacac
agtcagaagaaaagaagagctgttagtgttggacagttggtggatgtaaaggttttagag
aagaccaaggatgggctggaggtggctgttctgccccacaacgtccctgctttcctcccc
atacctcatctgtcggaccatgtcgccaacggccctctgttgtatcactggctccaggct
ggcgacatccttcacagagtcttgtgtctgagccagagtgagggacatgttctcctttgc
aggaagccagctttggtttccaccgtggagggcggccaggatcctaagagcttctcagaa
atccatcctgggatgctgctcattggttttgtgaagagcatcaaggactacggtgtgttc
gtccagttcccatcaggccttagtggactggcccccaaagctattatgagtgacaagttt
gtgacctccacaagtgaccattttgtcgaggggcagacggtggttgcaaaggtgaccaat
gtggacgaggagaagcagcgcatgctgctgtctctgcggctgtcggactgcggtctaggg
gacctggctaccaccagcctcctcctcctgagccagtgcctggaagagcggcagggtgtg
cgcagcctcatgagcagccgagactctgtgttgatccagacactggctgagatgattcca
gggatggtccttgacctagaggtgcaggaggtgttggaggatggctctgtggtgttcagt
gagggcccagtgcctggcctggtcctgagagcgagcagatatcatcgggcagggcaagag
gtggaacctgggcagaaaaagaaggctgtaatcttaaatattgatatgctgaagttagag
gtacatgtttccctttgccacgatttggtgaatcgaaaagctaaaaagctgaagaaaggc
agtgagtaccaggcgatcgtgcagcacttggaggagtcctttgctgtcgcctccttggta
gagactggccacctggcagccttctccctgacctctcacctcaatgacaccttccgcttt
gactcagagaagttgcaggtgggacagggtgtctccttaaccctcaagaccacagaacca
ggagtgactggttttcttttggctgttgaggggccagctactaagaggactgtgagacag
acccggaaggactctgagacagtcgatgaagacgaggaagcagatccagctctggtggtg
ggtgctgtgaagaagcacaccctgtccattggggacatggtcacagggactgtcaagtcc
attaaacccactcatgtggttgtgaccctggaagacggcatcattggctgtattcatgcc
tcccacattctagatgatgttccagtgggcacatctcctactgccaagctgaaagttggg
aagacggtcactgcccgagtgattggtgggcgagacatgaaaacattcaagtttctccca
ataagtcatcccagatttattcgaaccattccggagctgagtgtccggccaagtgagctg
gagaaggatggctgcactgctctcaacactcacactgtcagccccttggagaagattaaa
cagtaccaggctggacagaccgtgatttgcttcttgaagaagtacaacgtggttaagaaa
tggcttgaggtggagattgctccagacatccgggggaggattcccttgttgctcacttct
ctcagcttcaaggttctgaaacatccagataagaagttccggattggccaggccctgaag
gctacagtggttggcccagattcttccaaggccttcttgtgtctctcacttataggtcct
cacaagcttgagaaaggggaagtggccatgggccgagtggtgaaggtgactcccaaggag
gggctgactgtctccttcccctttgggaagatgggaactgttagtatatttcacgtgagt
gactcctactcggagatgcccctggaagacttcatcccccagaaggttgtcaggtgttac
atcctgtctgctacagaccatgtattgactctgtcgctgcgatcgtctaggacaaacccg
gagacgaagagcaaaataactgatgctgagattaactccatccaggatattcaggaaggg
cagctcctgaggggctatgtgaagtctgtccagccgcacggtgtgctctttggcctcggc
ccctctgttgtgggtttggcccaatacccacatgtctcccagtacagcccgtccaagaaa
gccctttataacagatacctcccggaagggaagctgcttacagccaaggtcctgagcctg
aaccgccagaagaacctggtagagctttcattcctccccggtgacactgggaagccggac
gtgtttcccgcctccctaggactgccacttctaaagcaagaggagaggaaaatggaggca
gaggagcaagagcacaaaggagaagaagagcagaagaagaagaatcagaaaaggaaaggg
aagaagaatgaggaagggcaggaggcagtgcggccgcctggcaaggagaagagcgagtcc
cagaaaccgcaggccaagaagcagggcaagcggccgcgccgggagcctgcaagtgaacag
gaaggagtgaagaaaaagcagaagaaagctgctccgtcagaggaagacgacagtggtgtt
gaagtgtattatcgggaaggggaagaggaggtggaagagaggagcgtgctgcccaagggg
aagccaaccaggccagcagaagtgccccggctacagctgtcctccggtttcatttgggac
gtggggctagactctctgaccccggccttaccacctcgaggagagagctcagacagtgag
gaggacgacaagccacagcagtccacgcagaagaggagcaagaaggaaaggatgttggag
aagcagaaggcagagaaagagctgtcccgcattgaggaggcactgatggatcccgggcga
cagccagagtccgcagatgattttgaccgactcttgctgagctcccccaacagctccatc
ctgtggctgcagtacatggccttccacctgcaggccacagagatcgagaaggcccgggcc
gtggctgagagggctctcaagaccatttccttcagagaggagcaggagaagctgaatgta
tgggtggctctgctgaatctagagaacatgtacggctctccggagtcactgaccaaggtc
tttgagcgggctgtgcagtacaatgagcctctcaaggtctttctccatctggctgacatc
tacaccaagtcagagaaattccaggaagctggtgagctctacaaccggatgctgaagcga
ttcaggcaggagaaatctgtctggatcaaatatggtgcctttcttctgcggaggggccag
gctggggccagtcaccgtgtgatgcagcgagccctcgagtgtctgcccaataaagagcat
gtggatgtgattgccaagtttgcccagctggagttccagctaggggatgcggaacgggcc
aaagccatttttgagaacacactgagcacctacccaaagcgcactgatgtctggtcggtt
tacatcgacatgaccattaagcatggcagccagaaggaagtccgggacatctttgagcgg
gtcattcatctcagcctggctcccaagcgaatgaaattcttcttcaagcgctacctggac
tatgagaaacaacacggcactgaaaaggacgtgcaggccgtgaaggcgaaggccctggaa
tacgtggaagccaagagctccgtgttggaggactag
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