Leopardus geoffroyi (Geoffroy's cat): 123578172
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Entry
123578172 CDS
T10761
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03015
mRNA surveillance pathway
lgf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123578172 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
123578172 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgf03021
]
123578172 (SYMPK)
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123578172 (SYMPK)
Transcription machinery [BR:
lgf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123578172 (SYMPK)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123578172 (SYMPK)
U7-dependent histone pre-mRNA processing factors
123578172 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Motif
Other DBs
NCBI-GeneID:
123578172
NCBI-ProteinID:
XP_045296786
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Position
E2:10947516..10982946
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AA seq
1273 aa
AA seq
DB search
MAGSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGTLDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPEAKEVPAGPLEEDDLEPLALAPAPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGVGAPSSSSSSSSSSTRPGPPQPEETIDFREEGPECET
PAIFISMDDDSGLTEAALLDSSLEGPLPKEATGGLTSKEERSPQTLTPAGDDTVKTPSPA
AEESGEPETKGNS
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcagcggagatagtgtcactcgccggagtgtggcatcccagtttttcaca
caagaggaggggccgggcatcgatggcatgaccacctcagagagagtggtggatctcctg
aaccaggcggcactgatcaccaatgactcgaagatcacagtactcaaacaggtccaggaa
ctgatcatcaacaaggatcccacactactggacaacttcctggacgagatcatcgctttc
caggcagacaagtcaattgaagtgcgcaaatttgtcatcggcttcatcgaggaggcatgc
aaacgagacattgagttactcctgaaactgatcgcaaacctcaacatgctcttgagggat
gagaatgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtcacgagtcatcagtgagctccaggaggcctgctgggacatg
gtgtccgccatggctggtgacatcattctgctgctggattctgataatgacggcatccgc
acccacgccatcaagtttgtggagggcctcattgtcaccctgtcaccccgcatggcagac
tcggaggtgccccgccgccaggagcatgatatcagcctggaccgcatccctcgtgaccac
ccctacatccagtacaatgtgctgtgggaagagggcaaggcagctttggagcagttgctc
aagttcatggtgcatcccgccatctcctccatcaacctgaccacagctctgggctccctt
gccaacatcgcccgccagaggcccatgttcatgtcagaggtgatccaggcctacgaaacc
ctgcatgccaacctgccccctacgctggccaaatcccaggtgagcagcgtgcgcaagaac
ctcaagttgcacctgttgagtgtcctgaagcacccggcctccttggagtttcaggcccag
attaccaccctgctggtggacctaggcacacctcaggctgagattgcccgcaatatgccc
agcggcaaggatgcccgcaagcggccccgggacgactcggattccacgctcaagaagatg
aagttagagcccaacctgggggaagatgatgaggacaaggacttggagccgggcccatcg
ggaacctccaaggcctcagcccagatctcaggccagtcagatacagacatcaccgccgag
ttcctgcagcctttgctgacacctgacaacgtggccaatctggtcctcatcagcatggtg
tacctgcccgaggccatgcccgcctccttccaagccatctatacccccgtggagtcagca
ggcactgaagcccagatcaagcacctggctcggctcatggccacacagatgacggctgca
ggactggggccaggtgtggagcagaccaaacagtgcaaggaggagcccaaggaggaaaag
gtggtgaagccagagagtgtcctgattaagcgacgcctgtcggcccagggccaggccatc
tcagtggtgggctccctgagctccatgtctactctggaggaggaggcgccccaggccaag
aggaggccagagcccatcatccctgtcacacagccccggctggcgggcgctggtgggcgc
aagaaaatcttccgtctgagcgatgtgctcaagcccctgaccgacgcccaggttgaggct
atgaagctgggcgccgtgaagcggatcctccgggcagagaaggccgtggcctgcagcggg
gcggcccaggtgcgcataaagatcctggccagtctggtgacacagtttgactcgggcctg
aaggccgaggtcttgtccttcatcctggaggatgtgcgggcccgcctggacttggccttc
gcttggctctaccaggagtacaatgcctacctggcagctggtgcctcgggcaccctggac
aagtacgaggactgccttatccgcctgctctccggcctgcaggagaagccagaccagaag
gatgggatcttcaccaaggttgtgctagaggcaccgctgatcactgagagcgccctggag
gtgattcgcaagtactgcgaggatgagagtcgcacttacctgggcatgtctacccttcga
gacctgatcttcaagcgcccatcccgccagttccagtacctgcatgttctgctagacctc
agctcccacgagaaggacaaggtgcgttcccaggccctgctgttcatcaagcgcatgtat
gaaaaggagcagctgcgagagtatgtggagaaatttgccctcaactacctgcaactcctg
gtccaccccaacccgccatctgtgctgtttggagctgacaaggacacagaggtggcagcg
ccctggaccgaggagacagtaaagcagtgtctgtacctctacctggctctcctgcctcag
aaccacaagctgatccacgaactggccgccgtgtacactgaggccatcgctgacatcaag
cggacggtgctgagggtcatcgaacagccgatccgaggaatgggcatgaactcaccagag
ctgctcctgctggtagaaaactgtcccaagggggcagagacactggtcacacgatgtctg
cacagcctcacggacaaagtcccgccctccccggagctggtgaagcgggtccgggatctc
taccacaagcgattgccagatgtccgcttcctcatccctgtgctcaatggactggagaag
aaagaagtgatccaggccctgccaaagctcatcaaactcaaccccattgtggtgaaagag
gtcttcaaccgcctgctgggcacccagcacggtgaagggaactcggccttgtccccgctg
aaccctggagagctgcttattgcgttgcacaacattgactcggtgaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcggaggtg
ctggccgtggtgatgcagcagctgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtctctgaccatgtacccccgcctgggggggttcgtcatgaacatcctg
tcccgcctcatcatgaagcaggtgtggaagtatcccaaggtgtgggagggcttcatcaag
tgctgtcaacgcaccaagccccagagcttccaggtcatcctgcagttgccaccccagcag
ctgggtgccgtctttgacaagtgcccagagctccgggagcccctgctggcccacgtccga
tccttcaccccccaccagcaagcacacatccccaactccatcatgaccatcctggaggcc
agtggcaagcaggagccagaggccaaggaagtgcccgcggggcccctggaagaggacgac
ctggagcccctggccctggccccagccccagccccccggccccctcaggacctcatcggc
cttcggctggcccaggagaaagccttaaagcggcagctggaggaggaacagaagctgaag
ccgggaggagtgggagccccctcgtcctcctcctcgtcctcctcttcctccacccggcca
ggccctccccagcccgaggaaaccatagatttccgggaggaggggcctgagtgtgagacc
cccgccatcttcatcagcatggatgacgactcggggctgaccgaggccgcactcctggac
tctagtctcgaggggcccctaccgaaggaggcaacaggcgggttgacctcaaaggaggag
cgcagcccccagaccctcacccctgccggagacgataccgtgaagacccccagccccgcc
gccgaggaatccggggaacccgagaccaaggggaacagctga
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