Leopardus geoffroyi (Geoffroy's cat): 123579324
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Entry
123579324 CDS
T10761
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123579324 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123579324 (EDC4)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123579324 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
123579324 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
123579324
NCBI-ProteinID:
XP_045299138
LinkDB
All DBs
Position
E2:43403957..43415465
Genome browser
AA seq
1437 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSGDGT
STNKSGVRAMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEEILVHIQQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVRVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRSLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHT
AHEDFAFGESRPELGSEGLGSATQGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFM
TPSTSLQQIAASPSNSNSSSSSSSSSSSLTAVSAMSSTSAVDPSLPRPPEELTLSPKLQL
DGSLTMSSSSSLQASPRSLLPSLLPGPADKLTPKAPGQVPTAASALSLELQEVEPLGLPQ
ASPSRTRSPDVISSASTALSQDIPEIASEALSRGFVSSAPEGLEPDSMASAASALHLLSP
RPRPASELGSQLGLDGGPGDGDRHSTPSLLEAALTQEATAPDNQVWPTAPDITRETCSSL
AESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTKVPT
PRLPAKDWKTKGSPRASPKLKRKGKKDDGDSAVGSRLMEHQVAEPPDDWPALIWQQQREL
AELRHSQEELLQRLCTQLEGLQSTVTGHVERALESRHEQDRILMGCGVAQGSVEAAAFLA
PGRDVGPASGLFLSYNAERRLERALAEGQQRGGQLQEQLTQQLSQALSSAIAGRLERSIR
DEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGSMKENISKLLKSKNLTDAIARAAAD
TLQGPMQSAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQ
EAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAEVQHQLHVAVGSLQESILAQVQRIVK
GEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAHLDCQAQQAHILQLLQQGHLNQAFQQA
LTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLLSLIQQLASDLGTRTDLKLSYLEEAV
MHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLGKVARRLSLMLHGLVTPSLP
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggcccgcggggggtcccagtgcagagagccagcggccatctaatgcc
tacaatggagatctcaatgggcttctggtcccagaccctctctgctcaggtgatggtact
tcaacaaacaagtctggtgtccgggccatgccacctattaatcttcaggaaaagcaggtc
atctgcctctcaggagatgacagctctacgtgcattgggattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcaagcaaggcacggggcagcaacaaggtgaaa
atccagcctgtggccaagtatgactgggagcagaaatactactacggcaacctgattgct
gtgtccaactccttcttggcctatgccattcgggccgccaacaatggttcagcgatggtg
cgggtgatcagtgtaagcacttcggagcggaccctgctcaagggcttcacaggcagcgtg
gctgatctggcctttgcacacctgaattcctcacagctggcctgcctagatgaggcaggc
aacctgtttgtgtggcgcttggctctagttaatggcaaaattcaagaagagatcttggtc
cacatccagcagccagagggtacaccactgaaccacttccgtaggatcatctggtgcccc
ttcatccctgaggagagtgaggactgctgtgaggagggcagcccaacggtggccctgttg
catgaggaccgggctgaggtgtgggacctggacatgctccgctccaaccacagcacctgg
cctgtgcgtgtcagccagatcaagcaaggcttcatcgtggtcaaaggccatagcacgtgt
ctaagtgaaggggccctctcacccgatgggactgtcctggctactgcaagccatgatggc
tttgtcaagttctggcagatctacattgaggggcaggatgaaccaaggtgtctgcacgaa
tggaagcctcatgatgggaggtccctttcctgcctcctgttctgtgacaaccataagaaa
caggaccctgaagtccctttctggaggttccttattactggcgctgaccagaatcgagag
ctaaagatgtggtgcacagtgtcctggacctgtctgcagacaattcgtttctccccagat
atctttagctcagtgagtgtgccccccagcctcaaggtttgtctggacctctcagctgaa
taccttattctcagcgatgtgcaacggaaggtcctctacgtgatggagctgctgcagaac
caggaggagggccgtgcctgcttcagctccatctctgagttcctgctcacccatcctgtg
ctgagcttcggtatccaggttgtgagtcgctgccggctgcggcacactgaagtgctacct
gctgaggaagagaatgacagcctaggggctgatggaacccacggagctggtgccgtggag
tctgcagctggtgtgctcatcaaactcttctgtgtgcatactaaggcattgcaagacgta
cagatccgcttccagccgcagctgaaccctgatgtggtggccccgctccccacccacact
gcccatgaggacttcgcatttggagagtctcggcccgaactgggctctgagggcctgggg
tcagctacccaaggctcccagcctgacctccgacgcatagtggagctacctgcacctgct
gacttcctcagtctgagcagtgagaccaagcccaagctgatgacacctgacgccttcatg
acacctagcacctccctgcagcagattgctgcctcccccagcaacagcaacagcagcagc
agctccagctccagctcctcctctcttacagctgtgtctgccatgagcagtacctcagct
gtggacccctccctgcccaggccacccgaggagctgactttgagccccaagttgcaactg
gatggcagtttgacaatgagcagcagcagcagcctgcaggcaagcccgcgtagcctcttg
cctagcctgctcccaggtccagctgacaaactgactcccaaagcacctggacaggtgcct
actgctgcttctgcactatcactggagctgcaggaagtggagcccctggggctaccccag
gcttcccctagccgtacccgctcccctgatgttatctcctcagcttccactgccctgtcc
caggacatccctgagattgcatctgaggccctctcccgtggttttgtctcctctgctcct
gagggtcttgaaccagatagtatggcctcggctgcctcagcgctacacctgctgtcccca
cggccccggccagcatctgagcttggctctcagcttggcctggatggaggccctggggat
ggggatcggcatagtaccccttcccttttggaggcagccttgacccaggaagccacagcc
cctgacaatcaggtctggcctacggcaccagacattactcgtgagacctgcagcagcctg
gcagagagtcccaggaatggcctccaggagaagcacaagagcctggccttccatcgacca
ccttatcacctcctgcagcaacatgatagccaggatgccagtgctgagcaaagtgaccat
gatgatgaagtggccagccttgcctctgctgcagggggctttggcaccaaagttcccact
ccacggctgccagccaaggattggaagaccaagggatctcctcgagcctcacccaagctt
aagagaaagggcaagaaagatgacggggattcggctgtaggatcccggctcatggagcac
caggtggcagaacctcctgatgactggccagcactaatttggcaacagcagagagagctg
gcagagctgcggcacagccaggaagaattgctgcagcgtctttgcacccaacttgaaggc
ttgcagagcacagtcacgggccacgtagaacgcgccctagagtcacggcatgagcaagac
cgtatccttatgggttgtggcgtggcacaggggtcggttgaagcagcagcattcttggcc
ccaggaagggatgtgggacccgcttcaggcctattccttagctacaatgcagagcggcgg
ctggagcgggcactggctgaggggcagcagcggggtgggcagctgcaggagcagctgacg
caacagctgtcccaggcactgtcttcagctatagctggtcggctagagcgcagcatacgg
gatgagatcaagaagacggtgcctccatgtgtctccaggagtttggagccagtggcaggc
cagctgagcaattcagtggccaccaagctcacagctgtggagggtagcatgaaagagaat
atctccaagctactaaagtccaagaacttgacagatgccattgcccgagcagctgcagac
acattacaggggccaatgcagtctgcctaccgggaagccttccagagcgtggtactgcca
gcctttgagaagagctgccaggccatgttccagcagatcaatgatagcttccgactgggc
acgcaagaatacttgcagcagctagagagccacatgaagagccggaaggcacgagaacaa
gaagcacgggagcccgtgttggcccagctgcgaggcctggtcagcacactgcagggtgcc
actgagcagatggcagccactgtatccagcagcgttcgggctgaggtgcagcaccagctg
cacgtggctgtgggcagcctgcaggagtcaattttagcacaggtacagcgcattgttaaa
ggtgaggtgagtgtagcacttaaggagcaacaggctgccgtcacgtctagcatcatgcag
gccatgcgttcagcagctggcacacctgtccccgctgcccacctcgactgccaggcccag
caagcccatattctacagctgctgcagcagggccacctcaatcaggccttccagcaggcc
ctgacggctgctgacctgaacctggtgctgtatgtgtgtgaaactgtggacccagggcag
gtttttgggcagccaccctgcccactctcccagcctgtgctcctttccctcatccagcag
ctggcctctgaccttggtactcgaactgacctcaagctcagctacctggaagaggctgtg
atgcacctggaccacagtgaccccatcactcgggaccacatgggctccgtcatggcccag
gtgcgccagaagctctttcagttcctgcaggctgagccgcacaactcacttggcaaagtg
gcccggcgtctcagcctcatgttgcacggccttgtaacccctagcctcccttag
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integrated database retrieval system
