Leopardus geoffroyi (Geoffroy's cat): 123579427
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Entry
123579427 CDS
T10761
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123579427 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgf03021
]
123579427 (SF3B3)
03041 Spliceosome [BR:
lgf03041
]
123579427 (SF3B3)
03036 Chromosome and associated proteins [BR:
lgf03036
]
123579427 (SF3B3)
Transcription machinery [BR:
lgf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
123579427 (SF3B3)
Spliceosome [BR:
lgf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123579427 (SF3B3)
Complex B
123579427 (SF3B3)
Complex C
U2 SnRNP specific factors
123579427 (SF3B3)
Chromosome and associated proteins [BR:
lgf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
123579427 (SF3B3)
TFTC complex
123579427 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
123579427
NCBI-ProteinID:
XP_045299422
LinkDB
All DBs
Position
E2:complement(48703421..48761839)
Genome browser
AA seq
1224 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEILCF
FHQDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNV
SEELDRTPPEVSKKLEDIRTRYAF
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgtttctatacaacttgaccttgcagcgagccactggcatcagctttgccattcatggc
aacttctctggaaccaaacaacaggaaattgttgtttcccgtgggaagatactggagctg
cttcgtcccgatcccaacactggcaaagtacacactctactaactgtggaagtatttggt
gttatccggtcactcatggcctttaggctgacaggtggcaccaaagactacattgtagtt
ggcagtgactcaggtcggattgttatcctggaataccagccatctaagaatatgtttgag
aaaattcaccaagaaacctttggcaagagtggatgccgccgcattgttcctggccagttc
ttagctgtggatcccaaggggcgagctgttatgattagtgccattgaaaaacagaagttg
gtatatatcttgaacagagatgctgcagcccggcttaccatttcatctcccttggaagcc
cacaaagcgaacactttagtatatcatgtggttggagtagatgtaggatttgaaaatcca
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatcccacaggggaagca
gcagctaatacccagcagacgcttactttctatgagttagaccttggtttaaatcatgtg
gtccgaaaatacagtgaacctttggaggaacatggcaactttcttattacagttcccgga
gggtcagatggtccaagtggagtgctgatctgctctgaaaactatatcacctataagaac
tttggtgaccaaccagatatccgctgtccaattcccaggagacggaatgacctggatgac
cctgaaagaggaatgatttttgtctgctctgccacccataagaccaaatcgatgttcttc
tttttggcccaaactgagcagggagatatcttcaagatcactttggagacagatgaagat
atggttactgagattcggctcaagtattttgatactgtgcctgttgctgctgccatgtgt
gtgcttaaaacaggcttcctttttgtagcatcagaatttggaaatcattacttatatcaa
attgcacatcttggagatgatgatgaagagcctgagttttcatctgccatgcctctggaa
gaaggagacacgttcttcttccagccaagaccacttaaaaaccttgtgctggttgatgag
ttggacagcctctctcccattttgttttgccagatagctgatctggccaatgaagacaca
ccacaactgtatgtggcctgcggtaggggaccccgatcatctctgagagtcctgcggcac
ggacttgaggtgtcagaaatggctgtctctgagttacccggtaaccccaatgctgtctgg
acagtgcgtcggcacattgaagatgagtttgatgcctatatcattgtgtctttcgtgaat
gccacacttgtactatccatcggagagactgtggaagaagtgactgactctgggttcctg
ggcacaaccccaaccttatcctgctccttgttaggagatgatgccttggtacaggtgtat
cctgatggcattcggcatataagagcagacaagcgagtcaatgagtggaagacccctggg
aagaaaacgattgtgaaatgtgctgtgaaccagcgacaagtggtgattgccctgacagga
ggagagctggtctattttgagatggatccttcgggacagctgaatgagtacacagagcgg
aaggagatgtcagccgatgtggtgtgcatgagtctggccaatgtgcctcctggagagcag
cggtctcgcttccttgctgtggggctggtggacaatactgtcagaatcatctccctggac
ccctcagactgtttgcagcctctgagcatgcaagctctcccagcccagcctgagtccctg
tgtattgtggaaatgggtgggactgagaagcaagatgagctgggtgagaggggctctatt
ggcttcctatacttgaatattgggttacagaatggtgtgctgctgagaactgtcctggac
cccgtcactggggatctgtctgacacccgcactaggtacctggggtctcgtcctgtgaaa
ctctttcgtgtccggatgcaaggccaagaggcagtgttggccatgtctagccgctcgtgg
ttgagctattcttaccagtctcgtttccatctcacccccttgtcttatgagaccctggaa
tttgcgtctggcttcgcctctgaacagtgtcctgagggcattgttgccatctccaccaat
accctgaggattttagcattggagaagctaggtgctgtcttcaatcaggtagcctttcca
ttgcagtatacacccaggaaatttgtcattcacccagagagtaacaaccttatcatcatt
gagacagaccacaatgcctacacagaagctacaaaagctcagagaaagcaacagatggca
gaggaaatggtagaagcagcaggggaggacgagcgggagcttgctgcagagatggcagca
gcgttcctgaatgaaaacctccctgaatccatttttggagctcctaaggctggcaatggg
cagtgggcctctgtgatccgagtcatgaatcctattcaagggaacacgctagaccttgtc
cagctagaacagaatgaggctgcttttagtgtggctgtttgtaggttctccaatactggt
gatgattggtatgtgttggtgggcgtggccaaagacctgatactcaatccccggtctgta
gcagggggctttgtctatacctacaagcttgtgaacaatggggaaaaattggagtttttg
cacaagactccagtggaagaggtccctgctgccattgccccattccaggggagggtattg
attggtgtggggaagcttctgcgagtctatgacttggggaagaagaagttactccgaaag
tgtgagaacaagcatattgccaattacatctctgggatccagactattggacacagggta
attgtgtctgacgtccaggaaagtttcatctgggttcgatacaagcgtaatgagaaccag
ctcatcatttttgctgatgatacttacccacgatgggtcactacggctagccttctggac
tatgacactgtggctggggcagataagtttggcaacatttgtgtggtaaggctcccacct
aacaccaatgatgaagtggatgaggatcccacaggaaacaaagccctgtgggaccggggc
ttgctcaacggggcctctcagaaggcagaggtgatcatgaactaccatgtaggcgagaca
gtgctgtcattacagaagaccacactgatccccggaggctcagaatcgcttgtctatacc
accttgtcaggaggaattggcatccttgtcccattcacatcccatgagattctttgtttc
ttccaccaggaccatgacttcttccagcatgtggaaatgcacctacggtctgagcatccc
cctctctgtgggcgagaccacctcagctttcgttcctattacttccctgttaagaatgtg
atagacggagacctctgtgagcagttcaactccatggagcccaacaaacagaagaatgtc
tctgaagaactggaccgaaccccacctgaggtgtccaagaagcttgaggacatccggacc
cgttatgccttctga
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integrated database retrieval system
