Leopardus geoffroyi (Geoffroy's cat): 123580274
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Entry
123580274 CDS
T10761
Symbol
RBM39
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lgf03041
]
123580274 (RBM39)
Spliceosome [BR:
lgf03041
]
Common components
Common spliceosomal components
General mRNP proteins
123580274 (RBM39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_MUD2_C
RRM_occluded
DUF8400
PRP38_assoc
Transformer
RBD_DEAH11
RRM_7
CDC45
Motif
Other DBs
NCBI-GeneID:
123580274
NCBI-ProteinID:
XP_045300735
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Position
A3:23539796..23570459
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AA seq
538 aa
AA seq
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MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYVILCFLFSSGPKFNSAIRGKI
GLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEF
FSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEK
NRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKG
YGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLG
TTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASAL
AAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG
NVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatattgatattgaagcaatgcttgaggctccttacaagaaggatgagaac
aagttgagcagtgctaacggccatgaagaacgtagcaaaaagaggaaaaaaagcaagagc
agaagtcgtagtcatgaacgtaaaagaagcaaaagtaaggaacggaaacgaagtagagat
agagaaaggaaaaagagtaaaagccgtgaaaggaagcgaagtagaagcaaagaaaggaga
cgaagccgctcaagaagtcgagatcgcagattcagaggccgctacagaagtccttatgta
attttgtgtttcctttttagctccggaccaaaatttaacagtgccatccgaggaaagatt
gggttgcctcatagcatcaaattaagcagacgacgctcccgaagcaaaagtccattcaga
aaagacaagagccctgtgagggaacctattgataatctaactcctgaggaaagagatgca
aggacagttttctgcatgcagctggcagcaagaattcgcccaagggatttggaagagttt
ttctctacagtaggaaaggttcgagatgtgagaatgatttctgatagaaattcaagacgt
tccaaaggaattgcatatgtggagtttgttgatgttagctcggtgcctctagcaatagga
ttaactggccaacgtgttttaggagtgccaatcatagtacaagcatcacaggcagaaaaa
aacagagctgcagcaatggcaaacaatctacaaaagggaagtgctggacctatgaggctt
tatgtgggctcgttacactttaacataactgaagatatgcttcgggggatctttgagcct
tttggaaggattgaaagtatccaactcatgatggatagtgaaacaggtcgatctaaggga
tatggttttattacgttttccgattcagaatgtgccaagaaggctttggaacaacttaat
ggatttgaactagcagggaggccaatgaaagttggtcatgttactgaacgtactgatgct
tccagtgctagctcatttttggacagtgatgaactggaaaggactggaattgacttggga
acaactggtcgtctccaattaatggcaagactcgcagagggtacaggtttgcagatccca
ccagcagcacagcaggctctacaaatgagtggctctttggcatttggtgctgtggcagaa
ttctcttttgttatagatttgcaaacaagactttctcaacagactgaagcttcagcttta
gctgcagctgcctctgtccagcctcttgcaacacagtgttttcaactctctaacatgttt
aaccctcaaacagaagaagaagttggatgggatacagagattaaggatgatgtgattgaa
gaatgtaataaacatggaggagttattcatatttacgttgacaaaaattcagctcagggc
aatgtgtatgtgaagtgcccatcaattgctgcagccattgctgctgtcaatgcattgcat
ggcaggtggtttgctggtaaaatgataacagcagcatatgtacctcttccaacttatcac
aacctcttccctgattctatgacagcaacgcaactactggttccaagtagacgatga
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