Leopardus geoffroyi (Geoffroy's cat): 123580562
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Entry
123580562 CDS
T10761
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03008
Ribosome biogenesis in eukaryotes
lgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
123580562 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
123580562 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgf03021
]
123580562 (XRN2)
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123580562 (XRN2)
03009 Ribosome biogenesis [BR:
lgf03009
]
123580562 (XRN2)
03016 Transfer RNA biogenesis [BR:
lgf03016
]
123580562 (XRN2)
Transcription machinery [BR:
lgf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123580562 (XRN2)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
123580562 (XRN2)
Ribosome biogenesis [BR:
lgf03009
]
Eukaryotic type
Pre-60S particles
RNases
123580562 (XRN2)
Transfer RNA biogenesis [BR:
lgf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
123580562 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
123580562
NCBI-ProteinID:
XP_045301426
LinkDB
All DBs
Position
A3:46410881..46489822
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILSKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFSPGGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSVSPNTSF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETKRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVDVPPELCHGMQG
KFSLDEEAVLPDQIVCSPVPMLRDLAQNTAISINFKDPQFAEDYIFKAVMLPGARKPAPV
LKPSDWEKSSNGRQWKPQLGFSRDRRPVHLDQAAFRTLGHVMPRGSGAGVYGNAAPPPAT
YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQ
NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggctttctttcgctggctcagccgcaagtacccgtccatcattgtcaac
tgcgtggaagaaaagccaaaagaatgcaatggtgtcaagattcctgttgatgccagtaaa
ccaaatccaaatgatgtggagtttgataatctctatttggatatgaatggaatcatccat
ccctgtactcatcctgaagacaagccagccccgaaaaatgaggatgaaatgatggttgca
atttttgagtacattgacaggcttttcaatattgtgagaccaagacgacttctttatatg
gcaatagatggagtggcaccgcgtgctaaaatgaaccagcagcgttccaggaggttcaga
gcctcaaaagaaggaatggaagcagcagtggagaagcagcgagtcagggaagaaatactg
tcaaaaggtggctttcttcctccagaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaacttgacagttattttatctgatgctagtgct
cctggtgaaggagaacacaaaatcatggattatattagacgacaaagagcccagcctaac
catgacccaaacactcatcattgcttatgtggagcagatgctgatctcattatgctcggc
cttgctacacacgaacccaactttaccatcattagagaagaattcaaaccaaacaaaccc
aaaccatgtggtctttgtaatcagtttggacatgaggtcaaggactgtgaaggtttgcca
agagaaaagaagggaaagcatgatgaacttgcagatagtcttccttgtgcagaaggagaa
tttatcttccttcgtcttaatgttcttcgtgagtatttggaaagagagctcaccatggcc
agcctaccattcacatttgatgtcgagaggagcattgatgactgggtcttcatgtgcttc
tttgtgggaaatgacttccttcctcacctgccatcattagaaattagggaaggtgcaatt
gaccgtttggttaacatatacaaaaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaagatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccagctttctctcctggtggaatattaacccca
catgccttgggttcaagaaattcaccaggttctcaagtagccagtaatccaagacaagca
gcctatgaaatgaggatgcagaataactctagtccttcagtgtctcctaatacaagtttc
acttctgatggctccccatctccgataggaggaattaagcgaaaagcagaagacagtgac
agtgaacctgagccagaggataatgtcaggctatgggaagctggttggaaacagcggtac
tacaagaacaaatttgatgttgatgcagctgatgagaaattccgtcgtaaagttgtacag
tcttacgttgaggggctctgctgggttcttcgatattattaccagggctgtgcttcctgg
aaatggtattatccattccattatgcaccatttgcttcagactttgaaggaattgcagac
atgccatctgattttgagaagggcactaaaccgtttaaaccactggaacaacttatggga
gtttttccagctgcaagtggtaactttctacctccatcatggcggaagctcatgagtgat
cccgattctagtataattgacttctaccctgaagattttgctattgatttgaatgggaag
aaatatgcatggcaaggtgttgctctgttgccttttgtggatgagcgaaggctgcgagct
gctctagaagaggtgtacccagacctcactccagaagagactaaaagaaacagtcttgga
ggcgatgtcttatttgtggggaaacatcacccacttcacgacttcattttggagctctat
cagacaggttccacagagccagtggatgtacctcctgaactatgtcatggaatgcaagga
aaattttctttggatgaagaagccgttcttccagatcaaatagtatgttctcctgtcccc
atgttacgagatctggcacagaacactgcaatcagtattaattttaaagacccacagttt
gctgaagactacatttttaaagctgtaatgcttccaggagcaagaaaaccagcaccagta
ctgaaaccaagtgactgggaaaagtccagcaatggacggcagtggaagccccagcttggc
ttcagtcgggaccggcggcctgtccatctagatcaggctgcattcaggactttgggccat
gttatgccaaggggctcaggggctggcgtttacggcaatgctgcaccaccacctgcgacc
tatcagggaaacttatacaggccactgttgagaggacaagcccagattccaaaactcatg
tcaaatatgaggccccaggattcctggcggggtcctcctccccttttccagcagcaaaga
tttgacagaggcgttggggctgaacctctgctgccatggaaccggatgctccaaacccaa
aatgcagccttccagccaaaccagtaccagatgctagctggacccggcgggtatccaccc
agacgtgatgatcgtggagggagacagggatatcccagagaaggaaggaaataccctttg
ccaccaccctcaggaagatacagttggaattag
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