Leopardus geoffroyi (Geoffroy's cat): 123580796
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Entry
123580796 CDS
T10761
Symbol
CCDC88A
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lgf03037
]
123580796 (CCDC88A)
Cilium and associated proteins [BR:
lgf03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
123580796 (CCDC88A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HOOK_N
APG6_N
Motif
Other DBs
NCBI-GeneID:
123580796
NCBI-ProteinID:
XP_045302047
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All DBs
Position
A3:complement(73977688..74120667)
Genome browser
AA seq
1874 aa
AA seq
DB search
MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVDGVFLNQVMLQINPKSE
SQRVNKKVNNDASLRIHNLSILVRQIKFYYQETLQQLIMMSLPNVLIIGKNPFSEQGTEE
VKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAAHIQEVTHNQENVFDLQWMEVTD
MSQEEIEPLLKNMALHLKRLIDERDEHSETIVELSEERDGLHFLPHASSSAQSPCGSPGM
KRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQELEQMEIELKRLQQENMNLLS
DARSARMYRDELDALREKAIRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETK
TMLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQK
QSMDESLHLGWELEQISRTSELSEAPQKSLGHEVNELTSSRLLKLEMENQSLTKTVEELR
STMDSAEGNTSKILKIEKENQRLSKKVEILENEIIQEKQSLQNCQNLSKDLMKEKAQLEK
TIETLRENSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETS
SKLSKIEFEKRQIRKELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEA
LEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLELRRNVESLKCASMKM
AQLQLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQ
QLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKR
LRQQAEIKDTTLEENNVKIGNLEKENKTLFKEISIFKESCIRLKELEKENKELVKRATID
VKTLVTLREDLVCEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESK
LESTLKKSLEIKEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERTVQSS
PPTSGEDNKWERESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQ
AQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSSLENENE
AVIKEREDLKSLYDSLIKDHEKLELLHERQASEYESLIAKHGTLKSAHKNLEVEHKDLED
RYNQLLKRKGQLEDLEKTLKVEQEKMLLENKNHETIAAEYKKLCGENDRLNHTYNQLVKE
TEVLQTDHKNLKSLLNNSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKGNL
EEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQ
YKFYDPSPPRRRGNWITLKMRKLIKSKKDINRERQKSLTLTPTRSDSSEGFLQLPHQDSQ
DSSSVGSNSLEDGQTLGTKKSSMVALKRLPFLRNRPKDKDKMKACYRRSMSMNDLVQSMV
LAGGQWTGSTENLEVPDDISTGKRRKELGAMAFSTTAINFSTVNSSTGFRSKQLVNNKDT
TSFEDISPQGISDDSSTGSRVHASRPASLDSSRTSTSNSNNNASLHEVKAGAVNIQSRPQ
SHSSGEFSLLHDHEAWSSSGSSPIQYLKRQTRSSPMLQHKMPETLESRAHHKIKTGSPGS
EVVTLQQFLEESNKLTSIQIKSSSQENLLDEVMKSLSVSSDFLGKNKPVSCGLARSVSGK
TPGDFYDRRTSKPEQFMRPSPRKTEDAYFISSPGKPTLGTQGKIKLVKETSLSRQSKDSN
PYATLPRASSVISTAEGTTRRTSIHDFLTKDSRLPISVDSPPATADSNITAASHVDKVQE
SRNSKSRSREQQSS
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaaatttttactcccctcctggagcagtttatgaccagccccttggtcact
tgggttaaaacgtttggacctctggctgcaggaaatgggaccaacctggatgaatatgtg
gctttggttgatggggtattcttgaaccaggtcatgctccaaatcaatcctaaatcggag
agtcagagagtaaataaaaaggtcaacaatgatgcatcacttagaattcataatctatcc
attttggtgagacagataaaattttattaccaggagactttgcagcaattgatcatgatg
tcattgccaaatgtcttaatcattggcaaaaatcctttttctgaacaaggcacagaagaa
gttaaaaagttgcttttacttttactgggttgtgcagttcagtgtcagaaaaaagaagaa
tttattgaaagaattcaaggtttagattttgatacaaaagcagcagttgccgcacatatt
caagaggtaactcataatcaggaaaatgtgtttgatctgcaatggatggaagtgactgat
atgtctcaggaggaaatagagccactcttgaaaaatatggcattacatctaaaaagactt
atagatgaaagagatgaacattcagagactatcgtagaactctctgaagaacgggatggt
cttcattttttaccccatgcctcttcatctgcacagtcaccctgtggttctccaggcatg
aagcgaacagaaagtcgacaacatctgtcagtggaactggcagatgctaaggcaaagata
agaaggcttagacaggaattggaggaaaagactgaacagttgttggactgtaaacaagaa
cttgagcaaatggaaatagaactaaaaaggctgcaacaagagaacatgaatttgctttcg
gatgctcgttccgctagaatgtaccgagatgaattagatgcacttcgggagaaggcaatc
agagtggataagcttgaaagtgaagtcagcagatacaaagaaagactacatgatattgaa
ttttataaggcaagagttgaggaattaaaagaagataatcaagttttattagaaacaaaa
accatgttggaagatcaattagaaggaactagagctcgttctgataaattacatgaatta
gaaaaagagaatttacaactgaaagctaaactgcatgatatggaaatggaacgtgatatg
gatagaaaaaagattgaagaattaatggaagaaaatatgactttggaaatggcacagaaa
caaagtatggatgaatcattacatcttggctgggagctggaacaaatatctagaactagc
gaactctctgaagcaccacaaaaatccttgggccatgaagtgaatgaattaacatcaagt
agattattgaagttggagatggaaaaccagagtctgacaaaaactgtggaagaacttcgg
agtactatggattctgccgaaggcaacacttccaaaatcctgaaaattgaaaaagaaaat
caaagactaagtaaaaaggttgaaattcttgaaaacgagattattcaagaaaagcaaagt
cttcagaattgtcagaatttaagcaaggatctaatgaaggagaaggctcaacttgaaaaa
acaattgaaacacttagagaaaattcagaaagacagattaaaatattggaacaggaaaat
gaacatctgaatcaaaccgtgtcttctttaaggcagcgatcccagataagtgctgaagcg
agggtgaaagacattgaaaaagaaaataaaattctccatgaatctatcaaagaaacaagt
agcaagttaagtaagattgaatttgaaaaaagacaaattaggaaagaattggaacattat
aaagaaaaaggagaacgagcagaagaacttgaaaatgagttgcatcatcttgagaaagaa
aatgaattgttacagaaaaagataaccaatttaaaaattacttgtgaaaaaattgaggcc
ttagaacaagaaaattcagagctagaaagagaaaatagaaaattaaaaaaaacattagat
agttttaaaaaccttacttttcagttagaatccctagaaaaagagaattcccaactagat
gaggaaaacttagaactgcgaaggaatgtggaatctttgaagtgtgcaagcatgaaaatg
gctcagctacagctagaaaataaagaactggaaagtgaaaaagagcagcttaagaagggt
ttagaactcatgaaagcatctttcaagaaaacagaacgcttagaagttagctaccagggt
ttagatacagaaaatcagaggctacagaaagctctagaaaatagcaataaaaaaattcaa
cagttagagagtgaactacaagacttagagatggaaaatcaaacattgcagaaaaaccta
gaagagttaaaaatatccagcaaaagactagaacaactagaaaaagaaaataaatcatta
gagcaagagacttctcaactggaaaaagataagaagcaactggagaaagaaaataaaaga
ctccgacagcaagcagaaataaaagataccacattggaagaaaataatgtgaaaattggg
aatttggaaaaagaaaacaaaacccttttcaaagagatcagtatttttaaagaatcctgc
attcgtctgaaagaattagagaaagaaaataaggagcttgtgaaaagagcaactattgat
gtaaaaactttggttacattacgagaggatttggtgtgtgaaaaattgaagactcaacaa
atgaataatgatcttgaaaaattaactcatgagcttgaaaagatagggctaaataaagag
cgactcttgcatgatgagcagagtactgatgacagtaggtacaaacttttggaatcaaaa
ttagaatcaactctaaagaagtctcttgaaattaaagaagaaaaaattgctgctttagaa
gctcgattagaagaatccacaaattacaaccagcagttgcgccaagaacttaaaacagtg
aaaaagaactatgaagctctcaaacaaagacaagatgaagaaaggacggtacagagctct
cctccaacttctggtgaagataataaatgggagcgagaaagtcaagaaacgactagagag
cttctgaaggttaaagacagattaattgaagtagaaagaaataatgctacattgcaagca
gagaagcaagcactgaaaactcaactgaagcaacttgagacacagaacaataatttgcag
gctcagattcttgcacttcagaggcagacagtgtccttacaggagcagaatactactctt
caaacgcagaatgcgaagcttcaggttgaaaattctacccttaattcccaaagtacttca
ctgatgaaccagaatgcacaactcctaatccagcagtcttccttagaaaatgaaaatgaa
gctgtaatcaaagagcgagaagacctgaaatctctctatgattctctgatcaaagatcat
gaaaagctggaacttcttcatgaacggcaggcttcagagtatgagtctctcatcgctaaa
catggaactctaaagtctgcccacaaaaatcttgaagtagaacataaagaccttgaagat
cgttacaatcagttactaaaacggaaaggacaattggaagatttggaaaaaacactgaaa
gtagaacaggaaaaaatgctgcttgaaaacaaaaaccatgagactatagctgcagaatat
aagaaactttgtggtgaaaatgataggttgaatcatacatataatcagcttgtaaaagaa
actgaagttttacaaactgaccataaaaacttgaaaagtcttctaaataattccaaactg
gaacaaaccagattagaagctgaattttcaaagttaaaggaacaataccaacagttggac
atcacatccaccaagctcaataaccagtgtgagttgctaagccaacttaaaggaaattta
gaagaagaaaatcgacatctactagatcaaattcagacattaatgctacagaacagaaca
ctattggagcaaaatatggaaagcaaagatctctttcatgttgaacaaagacaatacatc
gataagttaaatgaattaagacgacaaaaggagaaattagaagagaaaataatggatcaa
tacaaattttatgacccatctccccctagaaggagaggcaactggattactctaaagatg
agaaaattgataaaatctaagaaagatattaatcgggaacgtcagaaatctcttacatta
acacctacccgctcagactccagtgaaggatttcttcaactcccccatcaagatagtcaa
gatagttcttcagtaggctcaaattctttagaagatggccaaactttggggaccaagaaa
agcagcatggttgcactgaaaagactgccctttttgaggaacagaccgaaggataaagac
aaaatgaaggcctgctaccgtcgttccatgtccatgaatgacctggtgcagtccatggtc
ctagcaggaggacagtggacaggtagtactgagaatttggaggttcctgatgatatttca
acgggtaaaaggagaaaagaattgggagctatggccttctctactacagccatcaacttt
tcaactgtcaactcttctacaggcttcagatccaagcagttggttaataataaagatact
acatcctttgaagacataagtccacaaggtattagtgatgattctagtacgggatcaaga
gttcatgcttcaagaccagccagccttgatagtagcagaacatccactagcaatagtaat
aataatgcttcactccatgaagtcaaagcaggtgcagttaatatccaaagcaggccacaa
agccacagcagtggagaatttagcctgcttcatgatcatgaagcttggtccagcagtggt
agcagtccaatccaatacttgaaaagacagaccagatcaagtccaatgctccagcacaaa
atgcctgaaacgttagagagtcgagcacatcacaagatcaaaactggttctcctggaagt
gaagttgttactctacaacagtttttggaagaaagcaacaagcttacctcaatacagata
aagtcctcaagtcaagagaatcttttagatgaagtaatgaaaagtttgtctgtctcttct
gactttttgggaaaaaacaaaccagttagctgtggtctggccaggtcagtaagtggaaaa
accccaggagacttctacgatagacggacaagtaagcctgaacaatttatgagacccagt
cctcgaaagactgaagatgcctacttcattagctctccaggaaaacctaccttaggcact
caaggaaagataaaattagtgaaagaaacttctctgtcacgacaatcaaaagatagtaat
ccttatgccactttacctcgtgcaagcagtgtgatctctactgctgaaggaactactcga
aggacaagcatccatgattttctgaccaaggacagtagactacctatatcagttgattct
ccaccagctactgctgatagcaacatcactgcagcatctcatgtggacaaagtacaagaa
agcagaaattcaaaaagcaggtctagggagcaacaaagctcctaa
DBGET
integrated database retrieval system
