Leopardus geoffroyi (Geoffroy's cat): 123581498
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Entry
123581498 CDS
T10761
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04512
ECM-receptor interaction
lgf04514
Cell adhesion molecule (CAM) interaction
lgf04820
Cytoskeleton in muscle cells
lgf05144
Malaria
lgf05205
Proteoglycans in cancer
lgf05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123581498 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
123581498 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123581498 (SDC1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
123581498 (SDC1)
09174 Infectious disease: parasitic
05144 Malaria
123581498 (SDC1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
123581498 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lgf04131
]
123581498 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lgf04090
]
123581498 (SDC1)
00535 Proteoglycans [BR:
lgf00535
]
123581498 (SDC1)
Membrane trafficking [BR:
lgf04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
123581498 (SDC1)
CD molecules [BR:
lgf04090
]
Proteins
123581498 (SDC1)
Proteoglycans [BR:
lgf00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
123581498 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
123581498
NCBI-ProteinID:
XP_045303595
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Position
A3:124795440..124818915
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AA seq
310 aa
AA seq
DB search
MRRAALWLWLCALALRLQPALPQIVATNVPPEDQDGSGDDSDNFSGSGAGALQDVTLSQQ
PSSTWKGTELLTAVPTAPEPSGTDNTATSTSVLPAGERPEDREAVLPAEVEPGFTAREKE
TTHPSGETTPQPTTHQASTARATTAQGPVTSHPHRDMKPDHHETSAPAGPSQLDSHAPSV
EDRGPSATEKAAEDGVSTQLPAGEGSGEQDFTFDISGENTAVAAVEPDQRNQPPVDRGAT
GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
KPSKQEEFYA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcgctgcgctctggctctggctctgcgcgctggcgctgcgcctgcagccggct
ctcccgcaaatagtggccacaaatgtgccccctgaagatcaggatggctctggggatgac
tctgacaacttctctggctcaggtgcaggtgctctgcaagatgtcaccttgtcacagcag
ccctcatccacctggaagggcacggagctcctgacggccgtgcccacggccccagagccc
agcggcacagataacaccgccacctccacgtccgtcctgccggctggagagaggcctgag
gacagagaggcagtgctcccggcagaggtggagcctggcttcacggccagggagaaggag
accacccacccatccggcgagaccacgccacagccgaccactcaccaggcatcaacagca
agagccaccacggcccaggggcctgtcacctcccatccccacagggacatgaagcctgac
caccatgagacctcagctcctgcaggacccagccagctcgactctcacgcgcccagcgtg
gaggaccgtggtccttctgccactgagaaggctgccgaggatggggtctccactcagctc
ccagcaggagagggctctggggagcaggacttcacctttgacatatctggggagaacaca
gccgtggccgctgtggagcccgaccagcggaatcagcccccagtggaccgtggggccacg
ggggcctcccagggcctcctggaccgcaaggaagtgctgggaggggtcatcgctggaggc
ctcgtggggctcatcttcgccgtgtgcctggtgggtttcatgctgtaccggatgaagaag
aaggacgagggcagctactccttggaggagcccaaacaagccaacggcggggcctaccag
aagcccagcaaacaggaggagttctacgcctga
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integrated database retrieval system