KEGG   Leopardus geoffroyi (Geoffroy's cat): 123581498
Entry
123581498         CDS       T10761                                 
Symbol
SDC1
Name
(RefSeq) syndecan-1
  KO
K06257  syndecan 1
Organism
lgf  Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04512  ECM-receptor interaction
lgf04514  Cell adhesion molecule (CAM) interaction
lgf04820  Cytoskeleton in muscle cells
lgf05144  Malaria
lgf05205  Proteoglycans in cancer
lgf05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:lgf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    123581498 (SDC1)
   04514 Cell adhesion molecule (CAM) interaction
    123581498 (SDC1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    123581498 (SDC1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    123581498 (SDC1)
  09174 Infectious disease: parasitic
   05144 Malaria
    123581498 (SDC1)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    123581498 (SDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lgf04131]
    123581498 (SDC1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:lgf04090]
    123581498 (SDC1)
   00535 Proteoglycans [BR:lgf00535]
    123581498 (SDC1)
Membrane trafficking [BR:lgf04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    123581498 (SDC1)
CD molecules [BR:lgf04090]
 Proteins
  123581498 (SDC1)
Proteoglycans [BR:lgf00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   123581498 (SDC1)
SSDB
Motif
Pfam: Syndecan Romo1
Other DBs
NCBI-GeneID: 123581498
NCBI-ProteinID: XP_045303595
LinkDB
Position
A3:124795440..124818915
AA seq 310 aa
MRRAALWLWLCALALRLQPALPQIVATNVPPEDQDGSGDDSDNFSGSGAGALQDVTLSQQ
PSSTWKGTELLTAVPTAPEPSGTDNTATSTSVLPAGERPEDREAVLPAEVEPGFTAREKE
TTHPSGETTPQPTTHQASTARATTAQGPVTSHPHRDMKPDHHETSAPAGPSQLDSHAPSV
EDRGPSATEKAAEDGVSTQLPAGEGSGEQDFTFDISGENTAVAAVEPDQRNQPPVDRGAT
GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
KPSKQEEFYA
NT seq 933 nt   +upstreamnt  +downstreamnt
atgaggcgcgctgcgctctggctctggctctgcgcgctggcgctgcgcctgcagccggct
ctcccgcaaatagtggccacaaatgtgccccctgaagatcaggatggctctggggatgac
tctgacaacttctctggctcaggtgcaggtgctctgcaagatgtcaccttgtcacagcag
ccctcatccacctggaagggcacggagctcctgacggccgtgcccacggccccagagccc
agcggcacagataacaccgccacctccacgtccgtcctgccggctggagagaggcctgag
gacagagaggcagtgctcccggcagaggtggagcctggcttcacggccagggagaaggag
accacccacccatccggcgagaccacgccacagccgaccactcaccaggcatcaacagca
agagccaccacggcccaggggcctgtcacctcccatccccacagggacatgaagcctgac
caccatgagacctcagctcctgcaggacccagccagctcgactctcacgcgcccagcgtg
gaggaccgtggtccttctgccactgagaaggctgccgaggatggggtctccactcagctc
ccagcaggagagggctctggggagcaggacttcacctttgacatatctggggagaacaca
gccgtggccgctgtggagcccgaccagcggaatcagcccccagtggaccgtggggccacg
ggggcctcccagggcctcctggaccgcaaggaagtgctgggaggggtcatcgctggaggc
ctcgtggggctcatcttcgccgtgtgcctggtgggtttcatgctgtaccggatgaagaag
aaggacgagggcagctactccttggaggagcccaaacaagccaacggcggggcctaccag
aagcccagcaaacaggaggagttctacgcctga

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