Leopardus geoffroyi (Geoffroy's cat): 123583948
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Entry
123583948 CDS
T10761
Symbol
SIX4
Name
(RefSeq) homeobox protein SIX4 isoform X1
KO
K15615
homeobox protein SIX4
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf05202
Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
123583948 (SIX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lgf03000
]
123583948 (SIX4)
Transcription factors [BR:
lgf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
123583948 (SIX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
Motif
Other DBs
NCBI-GeneID:
123583948
NCBI-ProteinID:
XP_045307118
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Position
B3:complement(107569853..107583284)
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AA seq
784 aa
AA seq
DB search
MSSSSPTGQIASAADIKQENGMESASEGQEAPREVAGGAAAAAGLSPPAPAPFPLEPGDA
AAAAARVSGEEGAAAAAAADQVQLHSELLGRHHHAAAAVAAAAAAQTPLAFSPDHVACVC
EALQQGGNLDRLARFLWSLPQSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESA
NHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNA
LKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPSTE
DESSKGHEDLSPHPLSSSSDSVTNLSLSSHMEPVYMQQIGNAKISLSSSGVLLNGSLVPS
TSPVFLNGNSFIQGPNGVILNGLNVGNTQTVSLNPPKIASNIVSNGISMSDILGSTSQDV
KEFKVLQSSSANSAATTSYSPSAPVSFPGLIPSTEVKREGIQTVASQDGGSVVTFTTPVQ
INQYGIVQIPNSGANSQFLNGSIGFSPLQLPSVSVAASQGNISVNSSTSDGSTFTSESTT
VQQGKVFLSSLAPSAVVYTVPNSGQTIGSVKQEGLERSLVFSQLMPVNQNAQINANLSSE
NISGSGLHPLASSLVNVSPTHNFSLTPPTLLNPTELNPDIADSQPMSAPVASKSTVTSVS
NTNYATLQNCSLITGQDLLSVPMTQGALGEIVPTAEDQVGHPSPAVHQDFVREHRLVLQS
VANIKENFLTNSEGKATSNLMMLDSKSKYVLEGMVETVCEDLETDKKELAKLQTVQLDED
MQDL
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcttcctcccccaccgggcagatcgcaagtgcggcggacatcaagcaggagaat
gggatggaaagcgcctcggaagggcaggaggcgccccgagaagtggcggggggcgcggcg
gcggcagcggggctgagccccccggctccagcccctttccccctggagccgggggacgcc
gcggccgccgccgccagggtgagcggagaggaaggggcagcggcggccgcggcggcggat
caggtacaactccactcggaacttctgggcaggcaccaccacgccgcggccgccgtcgcc
gccgccgccgccgcgcagaccccactggccttctcgcccgaccatgtcgcctgcgtgtgc
gaggcgctgcagcaggggggcaacctggaccgcctggcccggttcctgtggtccctgccc
cagagcgacctgctacgtggcaatgagagcctgctgaaggcgcgggcgctggtggccttc
caccagggcatctaccccgagctctacagcatcctcgagagccacagcttcgagtcggct
aaccacccgctgctgcagcagctctggtacaaggcgcgctacaccgaggccgagcgagcc
cgcggccggccactgggcgccgtggacaagtaccggctgcgcaggaaattccccctgccc
cgcaccatctgggacggcgaggagacggtgtattgtttcaaggagaagtcgcgcaacgcg
ctcaaggagctctacaagcagaatcgctacccttcgcccgccgagaagcggcacctggcc
aagatcaccggcctctccctcacccaggtcagcaactggttcaagaaccgccggcagcgc
gatcggaacccctcagagacccagtccaaaagtgagtcagatggcaatcccagcactgaa
gatgaatccagcaagggccatgaggacttgtctcctcatccactctccagttcatcggat
agtgtcaccaacctcagcctttccagtcacatggagccagtatatatgcagcaaattgga
aatgctaagatatcattaagctcttctggagttttgttgaatggaagcttggtaccaagt
acttcacctgtctttcttaatggtaattctttcattcagggacccaatggagttatcctt
aatggattaaatgtgggaaatacacagacagtgtcactgaacccaccaaaaattgcatca
aacattgtgagcaatggtatatccatgagtgacatactggggtctacctcccaggatgtg
aaggaattcaaagtcctccagagttcttcagctaactccgcagccaccacttcctacagc
cccagtgcccctgtgtcattcccagggctgatacccagcactgaggtaaagagagaaggc
attcaaacagtggcttcccaagatggaggctctgtggtgacttttactacaccagtgcaa
attaaccagtatggcattgtccagatccccaattccggagcaaacagccagttccttaat
gggagcattggattctctccactgcagctgccttctgtttcagtagcagcttcacaaggc
aacatttcagtaaattcaagcacttcagatgggagcacatttacaagtgagtccaccaca
gtccagcaaggaaaggttttcttgagctctcttgctcccagtgcagtggtatacactgtc
cctaattcaggccagactataggatctgttaaacaggagggcttggagaggagcctggta
ttttctcagttgatgcctgtcaatcagaatgcacaaataaatgcaaatctgtcttctgaa
aatatctcggggagtggcctccatcccctggcctcctcattagttaatgtatccccaact
cacaatttttccctgactccccctaccttgctaaatcccaccgagctaaaccctgacatt
gctgatagccagccaatgtctgcacctgtggcaagcaaatctactgtgacatctgtcagc
aacactaactatgcaactcttcagaactgctcccttattactggtcaagatctattgtca
gtccctatgacccagggcgcccttggggaaattgttcctacagctgaggaccaggtgggt
cacccctccccagcagtacaccaggatttcgtcagagaacatcgtttagttctgcaatca
gtagctaatataaaagagaatttcttaacaaattctgagggcaaagccacaagcaactta
atgatgctggactcaaaatccaagtatgtcctagagggcatggttgagactgtctgtgaa
gacctggaaacagacaaaaaagagcttgccaagctccaaaccgtccaattggatgaagat
atgcaagacttataa
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