KEGG   Leopardus geoffroyi (Geoffroy's cat): 123584208
Entry
123584208         CDS       T10761                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
lgf  Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:lgf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    123584208 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lgf03400]
    123584208 (TDP1)
DNA repair and recombination proteins [BR:lgf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     123584208 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho RMMBL
Other DBs
NCBI-GeneID: 123584208
NCBI-ProteinID: XP_045307794
LinkDB
Position
B3:133549181..133638726
AA seq 612 aa
MSQEGDYGKWTISSSDESEDEKPKLDKPSTFSLPPAGQGAANEPRYTCSEARKAAHRRKR
SPVKFSNADSVSEVSPPKRQRSGSQEDLGWCLSSSDDELQPETLQKQAKNIVVKEERGIS
SPKDSAAQRPRNPTPPAHHRLEEEEEEEYETSGEGQDIWDMLDKGNPFRFYLTRVSGIEP
KDNSGALHIKDILSPLFGTLLSSAQFNYCFDVDWLVKQYPPQFRKKPILLVHGDKREAKA
HLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGI
WLSPLYPRVVHGTHRSGDSTTHFKADLISYLMAYNAPSLKEWIDVIHEHDLSETNVYLIG
STPGRFQGSQKDNWGHFRLRKLLKEHASSIPKGESWPIVGQFSSIGSMGADESKWLCSEF
KESLVTQGKESRTPGKSAAPLHLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSY
FHKWSAETSGRSNAMPHIKTYMRLSPDFSQIAWFLVTSANLSKAAWGALEKNGAQLMIRS
YELGVLFLPSAFGLDSFRVKQKFFSGSKEPTSSFPVPYDLPPELYGSKDRPWIWNIPYTK
APDTHGNMWVPS
NT seq 1839 nt   +upstreamnt  +downstreamnt
atgtctcaggaaggcgattatggaaaatggacaatatccagtagtgacgaaagtgaagac
gaaaagccaaaactagacaagccctctactttttccctccctcctgctgggcagggagca
gcaaatgagccaagatacacctgttccgaggctaggaaagctgcccatagaaggaaaaga
tcacccgtgaaattcagcaacgcagattcagtttcagaagtttcacctcccaaaaggcaa
aggagtggttcccaggaagacctaggttggtgtctctctagcagcgatgatgagctgcaa
ccagaaaccctgcagaagcaggctaagaacattgtggtcaaagaggagagaggcatctct
tctcctaaagacagtgctgcccaaagacccagaaatcccacccctcctgcacaccacagg
ctcgaggaggaggaggaagaggagtatgaaacttcaggggaaggccaagacatttgggac
atgttggataaagggaaccccttccgattttacctcactagagtctcgggcattgagcca
aaggataactctggagctctccacatcaaggatattttatcccctctatttgggacactt
ctgtcttcagctcagtttaactactgctttgatgtggactggctcgtaaaacagtatcca
ccacagttcaggaagaaaccaatcctgcttgtgcatggagataaacgagaagccaaggct
cacttacatgcccaggccaagccttatgaaaacatttccctctgccaggcaaagttggat
attgcatttggaacacaccacacgaaaatgatgttactgctgtacgaagaaggcctccgg
gttgtcatacatacctctaacctcatccatgctgactggcatcagaagactcagggaata
tggttgagccccttatacccacgagttgtccacggaacccacagatctggagactcaaca
acacattttaaagccgatcttatcagctacttaatggcttataatgctccttctctcaag
gagtggatagatgttatccacgagcatgatctctctgaaaccaatgtttatcttattgga
tcgaccccaggacgctttcaaggaagtcaaaaagataattggggacattttaggcttagg
aagcttctgaaagagcatgcctcatccatacctaaaggagagtcttggccaatagtaggt
cagttttcaagcattggctctatgggagctgacgaatcaaaatggttgtgttcggagttt
aaagaaagcttggtgacccaggggaaggagagcaggaccccagggaaaagtgctgctccc
ctccatctgatctacccttctgtggaaaatgtgcggaccagcttagaaggctatcccgct
ggtggctctcttccctatagcatccagacagctgaaaagcagaattggctccactcctat
tttcacaaatggtcggctgagacatctggccgcagcaatgctatgccacatattaaaact
tatatgagactgtctccagacttcagtcaaattgcctggttccttgtcacaagcgcgaat
ctgtccaaggccgcctggggagcattagagaagaatggtgcccagctgatgatccgttcc
tatgagcttggggtccttttcttgccatcagcatttggcctggacagcttcagagtaaaa
cagaaattcttctcagggagcaaggagccaacatcctcctttcctgtgccatacgatctt
cctccagaactgtatggaagtaaagatcggccatggatttggaatattccttataccaaa
gcaccagatacacacgggaatatgtgggttccctcctga

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