Leopardus geoffroyi (Geoffroy's cat): 123585060
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Entry
123585060 CDS
T10761
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lgf03000
]
123585060 (RC3H1)
04121 Ubiquitin system [BR:
lgf04121
]
123585060 (RC3H1)
Transcription factors [BR:
lgf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
123585060 (RC3H1)
Ubiquitin system [BR:
lgf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123585060 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
123585060
NCBI-ProteinID:
XP_045308815
LinkDB
All DBs
Position
C3:53336155..53424437
Genome browser
AA seq
1132 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAVLPDE
GAVDLPNRKTPALPNGIVSAGNTVTQLIPRGTDPTYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPTDLPPMPVTKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYTPPPQCMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQMEGYYP
VAPHPTQIRPSYIREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPAFHQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMA
PQGAPTKPMNISDYSPYGTHSGWGGSPYSPHQNIPSQGHFSERDRMSMSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREVNTLAGQSQPPPPPPKWPGMIS
SEQLSLELHQVEREIGKRTRELSMENQCSLDMKGKLNTSKQAENGQPEPQSKVPAEDLTL
TFSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacggatttcctctcctgcccaatttgcactcagact
ttcgatgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgagctcctccccgtgaactcagcattgctgcagctagtgggtgctcaggtccctgag
cagcagcccattactctgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagctggtgactctg
gtccactgccaacttgtggaagaggaaggcaggattcgtgctatgagagcagctcgatct
ttaggtgaacgaacagttacagagctcattcttcaacaccaaaatcctcagcaactgtcc
tccaatctctgggcagcagtcagagctaggggctgccagttccttggaccagcaatgcag
gaggaagctctaaagctggttctcttggccttggaagatggttctgctttgtcaagaaaa
gtattggttctctttgtggtgcaaaggttggagccacggtttcctcaagcctctaaaact
agcattgggcatgttgtccagctcctttatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaggaagaatttagaacctatgaagctctgcgg
cgagaacacgactctcagatagtgcagattgccatggaagcaggcttacggattgcacca
gaccaatggtcctcattgctttatggagaccagtctcacaagtctcatatgcagtcaatc
attgacaagttgcagaccccagcgtcttttgcacaaagtgttcaggaactaacaattgct
ctccagcgaactggagatccagcaaacttgaaccgactaagaccccatttggagctactg
gcaaacattgaccctagtccagatgctcctcctcccacttgggaacagctagaaaatggg
ctggtggctgtgcgtacggtggtccatggtctggtagactatatccagaaccatagcaaa
aagggagcagaccaacagcagcctccacagcacagcaaatataaaacatacatgtgtcga
gatatgaagcagaggggaggatgcccgcgtggggccagctgtacatttgcacactcacag
gaggaactggagaagtttcgtaaaatgaacaaacgcctggttcccagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccctcagcagctgtccttccagatgaa
ggtgcagtggatctgcctaacagaaaaacccccgctctgccaaatggaattgtatcagca
gggaatacggtaacacagctgattccacgagggacagaccccacctacgattctagtctg
aaaccaggaaagatagatcatctgagcagtagtgcccctggatcccctcctgacttgctg
gaatctgtccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
gggccaacagacttgcctcccatgcctgtcaccaaaccccttcagatggtcccacggggt
tctcagttatatccagcgcaacaggcagatgtttattatcaggatcctcgaggagctgcc
ccaccatttgaaccagcaccttatcagcagggtatgtactacactccaccaccacagtgt
atgtcccgctttgtcagaccgccaccatctgctcctgaacctggtcctccctacttggat
cactatccaccctatctccaggatcgtgtagtaaactctcagtatggcacacagccacaa
cagtacccacctatgtacccaccacactatgatggccgccgagtgtaccctgctcagtca
tacacaagagaggagattttccgagaaagtcctattcccattgagattccacctgcagca
gtgccatcctatgtgccagaatccagagaaagataccaacagatggagggttactatcca
gtggctccccatccaactcagatcagaccttcgtacatcagagagcctccttatagccgg
cttcctcctcctcctcagccccatcctagtctagatgagctacatcgcagacgaaaggaa
ataatggcccagctagaggaaaggaaggttatctctccacctccttttgcaccttcaccg
acattacctcctgcctttcatcaagaggagtttctggacgaagacttgaaagtagctggg
aaatacaaaggaaatgattatagccagtattctccctggtcatgtgataccatcggctcc
tacattggcaccaaagatgcaaaacccaaagatgttgtggcagcggggagtgtggaaatg
atgaacgtggagagtaaaggaatgagagaccagcgactggatcttcaaagaagagcagca
gaaaccagtgatgatgaccttatccctttcggagaccgaccaaccgtttctcggtttggt
gccatctctcgaacctccaaaacaatatatcagggtgctggtccaatgcaggctatggca
cctcagggagctcccacaaaaccgatgaacatctcagattatagtccatatggaacccac
agtggctggggaggttctccatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggacagaatgtccatgtcagaagtagccagtcatggaaaaccccttccatct
gctgagcgggaacagctacgactagaattgcagcaactaaaccatcaaattagtcagcag
acccagctacgtggcttagaggctgttagtaacaggctggtgttgcagagggaggtaaac
accctggcaggccagtcccagccaccaccaccacctccaaaatggcctggaatgatttca
agtgagcagttgagcttggaactgcaccaggtggaaagggaaatcgggaagagaacccgg
gaactgagtatggagaaccagtgttctctggacatgaaaggcaaattgaatacaagtaag
caagcagaaaatggacaaccagaaccacaaagtaaggttccagctgaggaccttacattg
acattcagtgatgtaccaaatggatcagctttgacacaagagaatatcagcctcctgtca
aacaagaccagctctctgaacctatcagaggaccctgagggaggaggtgacaacaatgac
tcccagagatcgggagttactcccagttctgctccctaa
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