Leopardus geoffroyi (Geoffroy's cat): 123589504
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Entry
123589504 CDS
T10761
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03440
Homologous recombination
lgf03460
Fanconi anemia pathway
Brite
DNA repair and recombination proteins [BR:
lgf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
123589504 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
123589504 (PALB2)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
123589504
NCBI-ProteinID:
XP_045317610
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Position
E3:23203126..23231126
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AA seq
1176 aa
AA seq
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MEEPPGKPLSYEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSVKKTAEEHDCLFQ
QDISPQLNHSESKNKVSPCETLQISTHLDEETGEKTPITLDIEPESFNLGHGPVEQLHIQ
SDIQEHFPYQVSGPSGEKRQSKLPERRKQQQRTFTSQARESFFDTDSLILSGKRLKKLEE
INRENPRTPVTRRTYLSSSTCDILDSPASVTETNVRGVLTPPTAKPQRVVDALVRGNHFP
TVSTLASFTPSNNSSGQHLEHKPPKGDCELITHGLKNIIPASPVNLEAQDQKMTVSTDNP
EVNKAVSASGQLPRSPDLETDNLCSVSEFAYNNLSANGNQNLKGQNHTEECLKSPHNTLD
DRNESPQEKEVVSQSKSLSPEVISPASAENQTHSCTMLEGLPFPAEYYVRTTRRMSSYQR
KVALEVVIQNHLGVKKKGYKNKSKEATKNLNLPSEETDQSGIRTSDTCTRQPSSRSPQKR
PSLTEVNSPTGPPKDNLSRKAVIQTSGRRHGRKTKSVCTPVLDDGELLLPTFGTSGVNRS
KEEVALNKEQNGKAIIHGKKDDRQKEDSLSSRNNAYLALDSAAFRTSFPKNEMLSLKQLS
SVLKTTDFQLPDEDFGPLKLKKLKSQSEKSVEPFVSKMYGDKLLKEGNCVVLEEMTPTQI
DIEMEDLEEEILVLPGKAQPKTPNPTSQPQKKGLSSSVVLFTPFNTVTPEDNDRLTADVC
SPAFPILGTTPAFGSQARCERVSTEVVGSTCSVPQLPHLKDCDRKQGDGWASPSKSDGSP
VVSGREGQPSCDSDSGSQAKLLPTESVTSEENQLCGNMHVESWKQSTEQTEVTDLPACNG
LIPGHLQLVSKLKNPSGSCSVDVSAMWWEIAGFKEPCIITACEYVVSLWKPLDTWQWEKL
YSWHFTEVPVLQIVPVPDVYNLVCVALGNLEIREIRSLLCSSDGGCEKQVLLSSGNIKAV
LGLTERRLVSSSGTLCDQRVEIMTFAEDGRSKEKQFLMSPEETVLTFAEVQGVQEALLGT
TVMNNIVIWNLKTGQLLKKMHIGDSYQASVCHKAYSEMGLLFVVLSHPCAKESEPLGSPV
FQLIVINPKTTLSVGVMLYCLPQGQAGRFLEGDVKDHFAAAVLTSGTIAIWDLLLGHCTA
LLPPVSDQHWSFVKWSGTHSHLLAGQKDGNIFVYRN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaaacctctcagctatgaggaaaaggaaaagttgaaggaaaag
ttagcgttcttgaaaagggaatacagcaagacgctggcccgcctccagcgtgcccaaaga
gctgagaaggttaagaattctgttaagaaaacagcagaagaacatgattgcttgttccag
caggacatttcaccacagctaaaccactcagaatctaaaaataaagtatctccttgtgag
acattacaaatcagcacccatctggatgaagaaactggagaaaagacacctatcacactt
gacattgagcctgagtccttcaaccttggacatggccccgtggaacaattacatatacaa
agtgatatccaagaacattttccctaccaggtcagtggtcctagtggtgagaaaaggcag
agtaagttgccagagagaagaaagcagcagcagagaacatttacttcacaggcgagagaa
tctttctttgacacggattcactcatactctctggaaaaagactaaagaaactggaagaa
atcaatagagagaatcctagaacacctgtaactagaagaacttacctttcaagttctacg
tgtgacattctggattctccagcatcagtgacagaaactaacgtaaggggtgtattaact
ccaccaactgccaaaccacaaagagttgttgatgcactcgtaagaggaaatcatttcccc
acagtgtctacacttgcttcatttactccatcaaataacagtagtggtcagcaccttgaa
cataagcctcctaaaggcgactgtgaactcattactcatggtttaaaaaacattatccct
gcttcacctgtaaacctagaggcacaagaccaaaaaatgactgtctctacagataaccca
gaggtaaataaagctgtaagtgcaagtggccagctgcctagaagtcctgacttagagaca
gataatttgtgctctgtgagtgaattcgcttacaataacttatcagcaaatggaaaccaa
aatttaaaaggacagaatcacacagaggagtgtttaaaatctccccataacactcttgat
gatagaaatgaaagtcctcaggaaaaagaggttgtaagtcaatctaagagtcttagccca
gaagtaatctctcctgcttctgcagaaaatcaaacacattcttgcacaatgctcgaaggc
cttccgtttcccgcagaatattatgttagaacaacacgacgcatgtcaagttaccagaga
aaagtagccctggaagttgtaattcaaaatcatttgggtgtcaaaaagaaagggtataaa
aataaaagtaaggaggcaactaaaaatttaaaccttcccagtgaagaaactgaccagagt
ggaattaggacctctgacacatgcacaagacaaccaagttcaagaagtcctcagaaacgt
ccctccttaactgaagtcaactctcccactgggccccctaaagataacctttccaggaag
gcagttatccagacatctggtaggagacacggaagaaaaacaaagtcagtctgcacccct
gtattagatgatggtgaactccttttgccaacttttggcacatcaggtgttaatagatcc
aaggaagaggttgccttgaacaaagagcagaatggaaaggcaattattcatgggaagaaa
gatgatcgtcaaaaagaggactccctttcttccagaaataatgcttatttggctttggat
tctgctgcattcaggacttcatttcctaagaatgagatgctaagtttaaagcaactgtcc
tctgttctcaaaaccacagattttcagttacctgatgaagactttggacctcttaagctt
aagaaactgaagtcccaatcagaaaaatcagtggagccttttgtatcaaaaatgtatggg
gataagctccttaaggagggcaactgtgttgttttggaagaaatgacacctacacaaatt
gatattgaaatggaggacttggaagaggaaattcttgttctcccaggaaaagcacaacct
aaaacaccaaacccaacaagccagcctcagaagaagggcctttcttcatccgtagtactt
ttcactcctttcaataccgtcacccctgaggataatgacagactgacggcagatgtgtgt
tcacccgccttccccatcctaggcactactccagctttcggctcccaagcacgctgtgaa
agagtgtccacggaggtggttggatcaacgtgctctgtaccccaacttcctcacttgaaa
gactgtgatcggaagcaaggcgacggttgggccagcccctcaaaatcagatggcagcccg
gttgtgtcgggtcgggaaggacagccttcctgtgacagtgattctggttcccaagcaaaa
cttcttcccactgagtcagtcacttccgaagaaaatcagctgtgtggaaatatgcacgtg
gagtcgtggaaacagtccactgagcagactgaagtaacagaccttcctgcttgtaatggc
ttaatcccaggccacctacaattggtttcaaagttaaagaatccttctggttcctgttcc
gtggacgtgagtgccatgtggtgggaaatagccggtttcaaagagccatgtatcataact
gcctgtgaatacgtagtttctctttggaaacctctagatacttggcagtgggaaaaactt
tattcctggcactttacagaggttccagtgttacagatagttccagtgcctgatgtttat
aacctcgtgtgcgtggctttgggaaatttggaaatcagggaaatcaggtcattactttgt
tcctctgatggtggatgtgaaaagcaagtgctactgagttctggaaatataaaagctgtg
cttggcctgacagagaggaggctagtcagtagcagtgggaccctttgtgaccaacgagta
gaaatcatgacatttgcagaagatggaagaagcaaagaaaaacaatttttgatgtcccct
gaagagactgtactaacttttgctgaggtgcaaggggtgcaggaagctctgcttggtacc
actgtaatgaacaacattgttatttggaatttaaaaactggtcagctcctgaaaaagatg
cacattggtgattcctaccaagcttcagtctgtcacaaagcctattctgaaatggggctc
ctgtttgttgtcctgagccatccttgtgccaaagagagtgagccgttgggaagccctgtg
tttcagctgattgtgattaaccctaagacaaccctgagtgtgggtgtgatgctctactgt
cttccccaagggcaggctggaaggttcctggaaggtgatgtgaaagatcattttgcagcg
gcagtattgacttctggaacaatcgccatctgggacttacttctgggtcattgtactgcc
ctcctcccacctgtctctgaccaacattggtctttcgttaaatggtcaggtacacattct
catttgttggccggacaaaaagatggaaatatatttgtctaccgcaactaa
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