Leopardus geoffroyi (Geoffroy's cat): 123589891
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Entry
123589891 CDS
T10761
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lgf03016
]
123589891 (RTCB)
Enzymes [BR:
lgf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
123589891 (RTCB)
Transfer RNA biogenesis [BR:
lgf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
123589891 (RTCB)
Prokaryotic type
tRNA splicing ligases
123589891 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
123589891
NCBI-ProteinID:
XP_045318422
LinkDB
All DBs
Position
B4:complement(127890886..127913097)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaattaagaaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctatcgggcttcctgatgtccactcaggttatgggtttgctattgggaacatggca
gcctttgatatgaatgaccccgaagcagtggtatccccaggcggtgtcggatttgacatc
aactgcggtgtccgcttgctcagaaccaatttagatgaaagcgatgtccagccagtgaag
gagcagcttgcccaggctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atccccatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agggaaggctacgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgttg
caggccgatcccaataaggtctccgcaagggctaagaaaagaggccttcctcagttgggg
accctgggagcaggaaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagc
ggaagcagaggcttgggccaccaagtagccacagatgcactggttgctatggaaaaagcc
atgaagagagacaagatcatagtcaacgaccggcagttggcttgtgctcggatcgcttct
ccagagggtcaggactacctgaagggaatggcagctgctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaactcct
gatgacttggacctacacgtgatctatgatgtttctcacaatattgccaaagtcgaacag
cacgtggtggatggaaaggaacggacactgttggtgcacaggaagggatccacccgagct
tttcctcctcaccatccccttattgctgttgattaccaactcactggacaaccagtgctc
attggtggcaccatgggcacctgtagttacgttcttactggcactgaacagggcatgact
gagaccttcggaacaacttgtcatggagcgggccgtgcattatcccgagcaaaatctcga
cgtaatttagatttccaggatgtcttggacaaactggcagatatgggaatcgcaatccgc
gttgcctcgcccaaactggttatggaagaggctcctgagtcctacaagaatgtgaccgac
gtggtgaacacctgccatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gccgtgatcaaaggatag
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