Leopardus geoffroyi (Geoffroy's cat): 123590227
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Entry
123590227 CDS
T10761
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04151
PI3K-Akt signaling pathway
lgf04510
Focal adhesion
lgf04512
ECM-receptor interaction
lgf04518
Integrin signaling
lgf04974
Protein digestion and absorption
lgf05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
123590227 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123590227 (COL2A1)
04518 Integrin signaling
123590227 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123590227 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
123590227 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
123590227 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lgf00536
]
123590227 (COL2A1)
Glycosaminoglycan binding proteins [BR:
lgf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123590227 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
123590227
NCBI-ProteinID:
XP_045319098
LinkDB
All DBs
Position
B4:complement(75295130..75326579)
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AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLATASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPSGEPGREGSPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGNLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSRSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccctgagacc
cccttcggagagtgctgccccatctgctcaactgacctcgccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacccggagacattaaggatattgtaggacccaaagga
cctcctgggcctcagggacctgcaggtgaacaaggacccagaggggatcgtggagacaaa
ggtgaaaaaggtgcccctggaccgcgtggcagagacggagagcctgggacccctggaaat
cccggcccccctggtcctcctggcccccctggcccccctggcctcggtggaaactttgct
gcccagatggccggaggatttgatgagaaggctggtggtgcccagatgggagtgatgcaa
gggccaatgggccccatgggacctcgagggcctccaggccctgctggtgctcccggacct
caaggatttcaaggcaaccctggagaacctggggaacccggtgtctctggtcccatgggt
ccccgcggtcctcctggcccccctggaaagcctggcgatgatggtgaagccggaaagcct
ggaaaatctggtgaaagaggccctcctggccctcagggtgctcgcggcttcccgggaacc
ccaggccttcctggtgtcaagggtcacagaggctacccaggtctagatggtgctaaggga
gaagctggtgctccaggtgtgaagggtgagagtggttcaccgggtgagaatggttctccg
ggcccaatgggtccccgcggcctgcctggagagagaggacggactggccccgctggggct
gcgggtgcccggggcaacgacggtcaaccaggccctgctgggcctccgggtcccgtgggt
cctgctggcggtcctggcttccctggtgctcccggtgccaagggtgaagctggccccact
ggtgctcgaggccccgaaggcgctcaaggtcctcgcggtgaacctggtactcctgggtcc
cctggaccggccggtgcctctggtaaccctggaactgatggaattcctggagccaaagga
tctgctggtgctccgggcatcgctggtgctcccggcttccctgggccccgtggtccacct
ggccctcaaggtgcaactggtccgctgggcccgaaaggtcagacgggtgagcctggtatt
gctggcttcaaaggcgaacaaggccccaagggagagcctggccctgctggcccccaagga
gcccctggtcctgctggtgaggaaggcaagagaggtgcccgtggagagcctggtggtgct
gggcccgttggtccccctggagaaagaggtgctcctggaaaccgtggcttcccaggtcaa
gatggtctggcaggtccaaagggagcccctggagagcgagggcccagcggccttgctggt
cccaagggtgccaacggcgatcctggccgtcccggagagcctggccttcctggagcccgg
ggtctcactggacgccctggcgatgccggtcctcaaggcaaagttggtccttctggagcc
cctggtgaagatggtcgtcctggacctccaggtcctcagggtgctcgtgggcagcctggt
gtcatgggtttccccggccccaaaggggccaatggcgaacctggcaaggctggtgagaag
ggacttcccggtgcccctggactgagaggtcttcccggcaaagatggtgagaccggtgct
gcggggccccccggacccgctggacctgccggtgaacgaggcgagcagggtgcccctggg
ccatctgggttccagggacttcctggccctcccggtcccccaggtgaaggtggaaagcca
ggtgaccagggtgttcctggtgaagctggagcccccggccttgtgggtcccaggggtgaa
cgaggtttcccaggtgaacgtggctctcccggtgcccagggcctccagggtccccgcggc
ctccctggcactcctggcacggacggccccaaaggcgcatctggcccagccggcccccct
ggggctcagggccctccaggtctgcaggggatgcccggtgagaggggagcagctggcatc
gctgggcccaagggagacaggggtgacgttggtgagaaaggccccgagggagcccctggg
aaggacggtggacgaggcctgactggtcccattggcccccctggccctgccggtgccaat
ggtgagaagggagaagttggacctcctggtcctgcgggaactgctggtgctcgtggagcc
ccgggtgaacgtggagagaccggcccccccgggcccgctggattcgcaggacctcccggt
gctgatggccagccaggtgccaagggcgagcaaggagaggctggccagaaaggtgatgct
ggtgccccgggtcctcagggcccctctggagctcctggacctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccaccggattccctgga
gctgctggccgtgtcggacccccaggctccaatggcaaccctggaccccctggtccccct
ggtccttctggaaaagatggtcctaaaggtgctcgaggagacagcggcccccctggccgt
gctggcgaccctggcctccaaggtcctgccgggccccctggcgagaagggagagcctgga
gatgatggtccctctggtcccgatggtcctccaggtccccaaggtctggctggtcaaagg
ggcattgttggtcttcctgggcaacgtggtgagagaggattccccggcctgcctggccca
tcgggtgagcctggcaagcagggagctcccggagcatctggagaccgaggtccccccggc
cccgtgggtcctcctggcctgactggtccttctggcgaacctggacgagagggaagccct
ggtgctgatggcccccctggcagagatggtgcggctggagtcaagggtgatcgtggtgag
actggtcccgtgggtgctcctggagcccctgggccccctggctctcctggccccgctggc
ccaactggaaagcagggagaccgaggagaagctggcgcacaaggccccatgggccctgca
ggaccagccggagcccggggaatcccaggtcctcaaggtccccgaggtgacaaaggagaa
gctggagaggctggcgagaggggcctgaagggccaccgtggcttcactggtctgcagggt
ctgcccggccctcctggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtcctcctggtcccgtcggtccctctggcaaagatggtgctaatggaatc
cctggccccattggacctcctggtccccgcggacgttcgggcgaaactggcccggctggt
cctcctggaaaccccggaccccctggccctccaggtccccctggccctggcatcgacatg
tctgcctttgctggcctaggccagagagagaagggccccgaccccctgcagtacatgcgg
gctgaccaggcagctggcaacctgagacagcacgacgccgaggtggatgccacgctcaag
tccctcaacaaccagattgagagcatccgcagccccgagggctcccgcaagaaccccgct
cgcacctgccgggacctgaaactctgccaccctgaatggaagagcggagactactggatt
gaccccaaccagggctgcaccttggacgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccagcgagtgttcccaagaagaactggtggagcagcagg
agcaaggacaagaagcacatctggttcggagaaaccatcaacggtggcttccacttcagc
tatggagatgacaacctggctcccaacactgccaacgtccagatgaccttcctacgcctg
ctgtccaccgagggctcccagaatatcacctaccactgcaagaacagcattgcctacctg
gatgaagcggctggcaacctcaagaaggccctgctcatccagggctccaatgatgtggag
atccgggctgagggcaacagcaggttcacatatactgtcctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactatgatcgagtaccggtcacagaagacctcgcgtctc
cccatcattgacattgcacccatggacataggagggcctgagcaggaatttggtgtggac
atagggcctgtctgcttcttgtaa
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integrated database retrieval system
