Leopardus geoffroyi (Geoffroy's cat): 123590343
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Entry
123590343 CDS
T10761
Symbol
VIM
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04820
Cytoskeleton in muscle cells
lgf05169
Epstein-Barr virus infection
lgf05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
123590343 (VIM)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
123590343 (VIM)
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
123590343 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123590343 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lgf04812
]
123590343 (VIM)
04147 Exosome [BR:
lgf04147
]
123590343 (VIM)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
123590343 (VIM)
Cytoskeleton proteins [BR:
lgf04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
123590343 (VIM)
Exosome [BR:
lgf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123590343 (VIM)
Exosomal proteins of other cancer cells
123590343 (VIM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
FKBP15
DUF1664
KIF21A_4th
TolA_bind_tri
DUF7491
GeBP-like_DBD
TPR_MLP1_2
RBD-FIP
Sec10_N
DUF4515
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
123590343
NCBI-ProteinID:
XP_045319361
LinkDB
All DBs
Position
B4:15936750..15944573
Genome browser
AA seq
466 aa
AA seq
DB search
MSTRSVSSSSYRRMFGGPGTGSRPSSSRSYVTTSTRTYTLGSALRPSTSRSLYASSPGGS
YATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDK
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE
DIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDE
EIQELQAQIQDQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSE
AANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQD
TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSS
LNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaggtctgtgtcctcgtcctcctaccgcaggatgttcggcggccccggcacc
gggagccggccgagctccagccggagctacgtgaccacgtccacccgcacctacaccctg
ggcagcgcgttgcgccccagcaccagccgcagcctctacgcctcgtccccgggcggctcg
tacgccacgcgctcctcggcggtgcgcctgcggagcagtgtgcccggtgtgcgtctgctg
caggactcggtggacttctcgctggccgatgccatcaacaccgagttcaagaacacccgc
accaacgagaaggtggagctgcaggagctgaacgaccgcttcgccaactacatcgacaag
gtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggc
cagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccgtcag
gtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgag
gacatcatgcggctccgggagaagttgcaggaggagatgcttcagagagaggaagccgag
agcaccctgcaatctttcagacaggatgttgacaacgcttctttggcacgtcttgacctt
gagcgcaaagtggaatccttgcaggaagagattgcctttttgaagaaactacatgatgag
gaaatccaggagctacaggctcagatccaggaccagcacgtccaaatcgacgtggatgtt
tccaagcctgacctcaccgccgccctgcgagatgtacgccagcaatatgaaagcgtggct
gccaagaaccttcaggaggccgaagaatggtacaagtccaagtttgctgacctctctgag
gctgctaaccggaacaatgatgccctgcgccaggcgaagcaggaatcaaatgagtaccgg
agacaggtccagtccctcacctgcgaagtggacgccctcaaagggactaacgagtctctg
gaacgccagatgcgtgaaatggaagagaactttgccgtcgaagctgctaactaccaagac
actattggccgcctgcaggatgagattcagaacatgaaggaggaaatggctcgtcacctt
cgcgaataccaagacctgctgaatgttaagatggctcttgacattgagatcgccacctac
aggaagctgctggaaggcgaggagagcaggattgctctgcctcttcccaacttttcttcc
ctgaacctgagggaaaccaatctggattcacttcctctggttgacactcactcaaaaaga
acacttctgattaagacggtcgaaaccagagatggacaggttatcaatgaaacttctcag
catcacgatgaccttgagtga
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