Leopardus geoffroyi (Geoffroy's cat): 123592056
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Entry
123592056 CDS
T10761
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lgf04121
]
123592056 (PDZRN4)
Enzymes [BR:
lgf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123592056 (PDZRN4)
Ubiquitin system [BR:
lgf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
123592056 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Sina_ZnF
zf-rbx1
PDZ_Tricorn
zf-RING_6
U-box
Motif
Other DBs
NCBI-GeneID:
123592056
NCBI-ProteinID:
XP_045322853
LinkDB
All DBs
Position
B4:69233522..69601133
Genome browser
AA seq
1037 aa
AA seq
DB search
MGFALERFAEAVDPDFECKLCGQVLEEPLCTPCGHVFCASCLLPWVARRRRCPLQCQPLA
PGKLCRVLPLRSLIQKLRIQCDYRARGCGRSVPLRELAAHVERCDFGPARRRRRGCASGP
GGRGGGDVPARGGCATAPGPGRGGGARGGPPGVRGGSGRGPRPRVLAWRRREKALLAQLW
ALQGEVQLSARRYQEKFAQYMAHVRNFARDLGGGHGPDGEHKPLTIVLERENDTLGFNII
GGRPNQNNKEETSKEGIYVSKILENGPADRADGLEIHDKIIEVNGKDLSKATHEEAVEAF
RNAKEPIVVQVLRRTPLSKPAYGTAPEVQLLDASTQTDITFEHIMALAKLRPPTPPVPDI
CPFLLSDSCHSLHPMEHEFYEDNEYLSSLPADADRAEDFEYEEVELCRVSSQEKLGLTVC
YRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSSEECKRI
VLLLARPETQLDEGWLEDERNEFLEELNLEMLEEQHNEAMQRTANEVEQPKKQEEEEGTT
DTATSSSNNHEKDSGVGRTDESLRNDESSEQENAAEDPNSASLKSRRELGQSQDTLGSVE
LQCNESFASGEYIDSDCIGNPDEECERFRQLLELKCKIRNHGEYDLYYSSSTIECHQGEQ
EGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHGGGFRNYNTSIDMQRG
KLDDIIEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSTMAAN
QSSSGLSSKESTSPKAKTTEPGCSIEGKEKISESGKLSDQEQTSSEHIPYLSPYHSSSYR
YANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKMEWKVKIRSDGTR
YITKRPVRDRILRERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRR
REFMMRSRLECLKESPQSGSEGRKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAK
SPDGTRVHNAFLSVTTV
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgccctggagcgcttcgccgaagcggtggacccggatttcgagtgcaagctg
tgcggccaggtgctggaggagcccctgtgcacgccgtgcggacacgtcttctgcgccagc
tgcctgctgccctgggtggcgcggcggcgccggtgcccgctgcagtgccagcccctggcg
ccgggcaagctgtgccgggtgctgcctctgcgcagcctcatccagaagctgcgcatccag
tgcgactaccgcgcccgcggctgcggccgctcggtcccgctgcgcgagctggcggcgcac
gtggagcgctgcgacttcggccctgcccgccgccgccggcgtggctgcgcctcggggccc
ggcggccgcggcggcggggacgtgcccgcgcgggggggctgcgccacggcgcctgggccc
ggccggggcgggggcgcgcgcggggggccgccgggcgtccgcggcggcagcgggcggggg
ccccggccgcgagtcctcgcctggaggcggcgcgagaaggcgctgctggcgcagctctgg
gcgctgcagggcgaggtgcagctctcggcccgcaggtaccaggagaagttcgcccagtac
atggctcacgtccgcaacttcgccagagacctgggcggcggccacggcccggatggagaa
cataaaccactcaccattgtgttagaaagagaaaatgacacgttggggttcaatattata
ggaggtcgaccaaatcagaataataaggaagaaacatcaaaggaaggaatttacgtttca
aaaattttggaaaatggacctgccgacagagcagatggcctggagattcatgacaaaatc
attgaggtcaatgggaaggatctctcaaaggccacccatgaagaggcagtggaagctttt
cgaaatgccaaggaacccattgtggtccaggtgctaagacggacgcctctcagtaaaccc
gcgtatggaacggccccagaagtgcagctcttggacgccagcactcagacagacatcacc
tttgaacacatcatggctctggccaaactgagaccacctacccctccagtgccagacatc
tgtccatttctgctctcagacagctgccattctcttcatccgatggagcatgaattttat
gaggacaatgagtatctttccagcttgcctgctgatgcagacagagcagaggactttgaa
tatgaggaggtcgagctgtgtcgtgttagcagtcaagagaagctgggcctgacagtctgt
taccgaacggatgatgaagaagacacgggcatttatgtcagcgaggtagatccaaatagc
attgctgccaaagatggccgaattcgagaaggggatcgtattttgcaaataaatggggaa
gacgtccagaatcgagaagaagcagtggcgttgctgtcgagcgaggagtgtaagagaatc
gtgttgctcctcgcaaggccggagactcagctggatgaaggctggctggaagatgaaagg
aatgaattcttagaggagttaaacttggagatgctggaagaacagcataatgaagcaatg
cagcgcacggccaatgaggtggagcagccaaaaaaacaagaagaagaagagggcacaaca
gatacggcaacgtcctcctctaacaaccacgagaaagacagtggggtggggcgtacagat
gaaagcttgcggaacgatgagagctcagagcaggagaacgcagcggaggatcccaacagc
gcatccctgaagagcaggagagagctggggcagagccaagacactctaggaagcgttgaa
cttcagtgcaatgagagcttcgcgtctggtgaatacatagactcagactgcatcggcaac
ccagatgaggagtgtgaaagattccgacagctcttggagctcaaatgcaagattcggaac
catggagaatatgacctgtattactcgagcagcacaatagaatgccatcaaggggaacaa
gagggagtggagcacgaactacagttgcttaacgaagaactgagaaacattgaactggag
tgccagaatatcatgcaggctcacaggctccagaaagtgacagaccagtatggagacatc
tgggctttgcacggtggaggattccggaattacaacaccagcatagacatgcaaagggga
aagctagatgacatcatcgaacacccagaaaagtcagacaaggacagttctagcgcttac
aacacagctgaaagctgcagaagcactccactcactgtggaccgttcccctgacagttcc
cttccaagaatgatcaacctcaccaataagaaaaacctgagaagcaccatggccgccaat
cagtcttcttccgggctgagcagtaaagagtcgacctcccccaaagccaaaaccactgaa
ccaggttgcagcattgaaggcaaggagaagatttcagagagcggcaagctttctgatcag
gagcaaaccagcagcgaacacatcccttacctctccccttaccacagctcctcctacaga
tacgcaaacatcccagcacatgcccgccattatcaaagctacatgcagttgattcaacag
aaatctgcagtggagtatgcgcagagtcagctgagtttagtgagcatgtgcaaggagtct
cagaagtgttcagagcccaagatggaatggaaggtgaaaattcggagcgacgggacgcgg
tacataacaaagagaccagtacgagaccggattctgagggaacgtgccttaaagatcaag
gaggagcgcagtggcatgacgacggatgatgacaccatgagcgagatgaaaatgggccgc
tactggagcaaagaggaaagaaagcaacacctggttcgggccaaggagcagcgtcggcgc
cgggagttcatgatgcggagccggttggagtgtctcaaggagagcccccagagcggcagc
gagggcagaaaggagatcaacatcattgaactgagccacaaaaagatgatgaaaaaaaga
aacaagaaaattttggacaactggatgacaatccaagaactgatgacccacggggccaag
tctcctgatggcacacgagttcataatgcctttttgtcagtcaccaccgtatga
DBGET
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