Leopardus geoffroyi (Geoffroy's cat): 123592063
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Entry
123592063 CDS
T10761
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03013
Nucleocytoplasmic transport
lgf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123592063 (UPF2)
03015 mRNA surveillance pathway
123592063 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123592063 (UPF2)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123592063 (UPF2)
mRNA cycle factors
P-body specific factors
123592063 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
123592063
NCBI-ProteinID:
XP_045322864
LinkDB
All DBs
Position
B4:complement(10939369..11049933)
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AA seq
1272 aa
AA seq
DB search
MPAERKKPASMEEKETLLNNKEKDCSERRPVSSREKPKEEIKLTAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEEEKKKQEEQVKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKDSNKDDSKEAKEPKDNKEVSNPEDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEREFLIKLGLVNDKDSKE
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNDPEEEEGSDNDDDEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQGDVDPAARVISLGPVSDVVDSGVLQQLNESSG
HISACRSRELRI
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaaactttactaaacaac
aaggaaaaggactgcagtgaaaggcggccagtgagcagcagggagaaaccaaaagaggag
atcaaacttactgccaagaaggaggttattaaggtccctgaagataaaaagaagaaactg
gaagaagataagagaaaaaaagaagacaaggaacgaaagaaaaaagaagaagaaaaggtg
aaggcagaggaagaattaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaggaa
gagaaaaagaagcaagaagagcaggtaaaacgtcagcaagaagaagaagctgcccagttg
aaagagaaagaagaatcccttcagcttcatcaagaagcttgggaacgacatcagttaagg
aaggaacttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttcttt
agccgactagactcaagcttgaagaaaaatactgcttttgtcaagaaattaaaaactatt
acggaacaacagagagactccttgtcccatgattttaatggcctaaatttaagcaaatac
attgcagaagctgtagcttctattgtggaagcaaagctgaaaatatctgatgtgaactgt
gctgtgcacttgtgttctctctttcaccagcgttatgccgactttgctccgtcacttctt
caggtttggaaaaaacattttgaagcgaggaaagaagagaaaacccctaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtctatccttaatctatgaacagctaaaaaatattattaatgccgatcgggaatcc
catactcacgtttctgtggtgattagtttttgtcgacattgtggagatgatattgctgga
cttgtaccacggaaagtgaagagtgctgcggagaagtttaatttgagtttccctcctagt
gagataattagtccagagaaacaacaacctttccagaatcttttaaaagagtactttaca
tctttgaccaaacacctgaaaagggaccacagggagcttcagaatacagagagacaaaac
aggcgtattctccattctaaaggagagctaagtgaagatagacataaacagtatgaggag
tttgctatgtcgtatcagaagttgctagcaaattctcaatccttagcagaccttttggat
gaaaatatgccagatcttcctcaagacaaaccaacaccagaagagcatgggcctggaatt
gatatctttacacctggtaagcctggagaatatgatttggaaggtggtatttgggaagat
gaagacgctcggaatttttatgagaacctcatcgatttgaaagcttttgttcctgccatc
ttgtttaaagataatgagaaaagttgtcagaataaagattccaacaaagatgattccaaa
gaggcaaaagaacctaaagataataaggaggtatcgaatcctgaagatttggaacttgag
ttggagaacctagaaattaatgatgataccttggaattagaaggtggagatgaagctgag
gatcttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagcactgga
tctcatctcaagctcatagtagatgctttcctacagcagttgcccaactgtgtcaaccga
gatctgatagacaaggcagcaatggatttttgcatgaacatgaatacaaaagcaaatagg
aagaagttggtacgggcgctcttcatagttcccagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatatcgaa
acaaagaacaaaactgttcgttttattggagaattaactaaatttaagatgttcacaaaa
aatgatacactacattgtttaaagatgcttctatcagacttttcccatcaccatattgaa
atggcgtgtactctactggaaacatgtggaagatttcttttcagatctccagaatcacac
ctgaggaccagtgtacttttggaacaaatgatgagaaagaagcaagcaatgcaccttgat
gcaagatacgttacaatggtggagaacgcatattactactgcaacccacctccagctgaa
aaaacagtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttatacaag
gatctctcaaaggttaccactgagaaggttttgagacagatgcgaaagttgccctggcag
gaccaagaagtgaaagactatgttatttgttgtatgataaacatctggaacgtgaaatat
aatagtattcattgtgtagccaacctcttagcaggactggtactctaccaagaagatgtt
ggaatccatgttgtggatggagttttagaagatattcgattaggaatggaggttaatcaa
cctaaatttaaccagagacgtatcagcagcgccaagttcttaggggaactttataattat
cgaatggtggaatcagctgttatttttagaactctttattcttttacttcatttggtgtt
aacccggatggctcgccaagttcactagacccccctgagcaccttttcagaattaggcta
gtgtgcactattttggatacctgtggccagtactttgacagaggttctagtaaacgaaaa
cttgattgcttccttgtatactttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacgaaagaccatccatttcctattgacatagattatatgatcagtgatacactagaa
ctgctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacac
gacttggaacgagaattcttaataaaactaggcctagtaaatgataaagattcaaaagag
tctatgacggaaggagaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaa
acagaagaacaatctggaaatgaaagtgaagtaaatgacccagaagaagaggagggttct
gataatgatgatgatgagggcgaggaagaagaggaagagaataccgattaccttacagat
tcaaataaagagaatgaaacagatgaagaaaatactgaggtaatgattaagggaggtgga
cttaagcatgtaccttgtgtggaagatgaggacttcattcaagctctggataaaatgatg
ctggaaaaccttcagcaacgaagtggcgaatctgttaaagtgcaccaacttgatgttgct
attcctttgcatctcaaaagccagctgaggaaagggccacctctcggtggtggggaggga
gaggcggagtctgcagacactatgccctttgtcatgttaacaagaaaaggcaataaacaa
cagtttaagatccttaatgtacccatgtcttcccaacttgctgcaaatcactggaaccag
caacaggcagaacaagaagagaggatgagaatgaaaaagctcacactagatatcaatgaa
cggcaagaacaagaagattatcaaggagacgttgatccagcagcacgtgtcatttcatta
ggtcctgtatctgatgttgtggatagtggagtcctccagcaattgaatgagagcagtgga
cacatctcagcatgtcggtctagagagttgcgaatctaa
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