Leopardus geoffroyi (Geoffroy's cat): 123593009
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Entry
123593009 CDS
T10761
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123593009 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lgf03041
]
123593009 (PRPF4)
Spliceosome [BR:
lgf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
123593009 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
123593009
NCBI-ProteinID:
XP_045324441
LinkDB
All DBs
Position
D4:73534453..73551177
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AA seq
598 aa
AA seq
DB search
MSVSDFLIVIRPSNFMSVALRLKTFEMCRPVTNLFPLNNCVGYLLSFLSPGMSQSLGCFI
KPKKRLPPNDVNMCQSKSWIEKLPKQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLA
KGESGILGKEGLKAGIEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTD
DSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQ
TWYHEGPNSLKVARLWIANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNF
CSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPK
STVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYD
RSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE
GHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNF
LLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgtcagacttcttaattgtaataaggccttcaaacttcatgtctgttgcctta
cgactgaaaacgtttgaaatgtgtaggccggtaactaacttgttcccccttaataattgc
gttggttatttgttatcctttctttcccctgggatgagccaaagcctcgggtgtttcata
aaacccaagaagagattgccaccgaatgatgtaaacatgtgccaaagcaaatcttggata
gaaaaattaccaaaacaggcaaccaaaactaaggcacctgatgacttagttgctcctgtt
gtgaagaaaccacatatctattacggaagtttggaagagaaggagagggagcgtctggcc
aaaggagagtctgggattttgggaaaagaaggacttaaagctggaattgaagcaggaaat
attaacataacctctggagaggtgtttgaaattgaagagcacatcagtgaacgacaggct
gaagtattagccgagtttgagagaagaaagcgagcccggcaaatcaatgtttccactgat
gactcagaggtcaaggcttgccttagagccttgggggagcccatcacactctttggagag
ggtccggctgaaagaagagaaaggttaagaaatatcctctcagtggttggtactgatgcc
ttaaaaaagaccaaaaaagatgatgagaaatctaagaagtccaaagaagagtatcaacaa
acctggtaccatgaaggaccaaacagcctgaaggttgctagactgtggattgctaattat
tcgctgccaagggcaatgaaacgcttagaagaggcccgtctccataaagagattccagag
acaacaaggacctcccagatgcaagagctgcacaaatctctccggtctttgaataatttc
tgcagtcagattggggatgatcggcctatctcctactgccactttagtcctaattccaaa
atgctggccacagcttgttggagtgggctttgcaagctctggtctgttcccgattgcaac
ctccttcacactctccgaggccataacacaaacgtaggagcaattgtattccatccaaaa
tccactgtctccttggaccagaaagatgtcaatctggcgtcttgtgctgctgacggttct
gtgaagctttggagccttgacagtgatgaaccagtggcagatattgaaggccatacagta
cgtgtggcccgtgtaatgtggcatccatcaggacgtttcttgggcaccacttgctatgac
cgctcatggcgcttatgggatttagaggctcaagaggagatcctgcatcaggaaggccac
agcatgggcgtgtatgacatcgccttccatcaggatggctctttggctggcactggggga
ctggatgcgtttggtcgtgtttgggacctgcgtacaggacggtgtatcatgttcctagaa
ggccacctgaaggaaatctatggaataaatttctcccccaatggctaccacattgcaacc
ggcagcggtgacaacacctgcaaagtgtgggacctccggcagcggcgctgtgtctatacc
atccccgcccatcagaacttagtgaccggtgtcaagtttgagcctatccatgggaatttc
ctgcttactggtgcttacgacaacacagccaagatctggacacatccaggctggtcccca
ctgaagactttggctggccatgaaggcaaagtgatgggcctagacatttcttccgatggg
cagctcatagccacttgctcttatgacaggaccttcaagctctggatggctgaatag
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