Leopardus geoffroyi (Geoffroy's cat): 123593049
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Entry
123593049 CDS
T10761
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03013
Nucleocytoplasmic transport
lgf05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123593049 (NUP188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
123593049 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123593049 (NUP188)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123593049 (NUP188)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
TRS130_4HB
HEAT_SCC3-SA
Gar1
Motif
Other DBs
NCBI-GeneID:
123593049
NCBI-ProteinID:
XP_045324515
LinkDB
All DBs
Position
D4:87517829..87576779
Genome browser
AA seq
1766 aa
AA seq
DB search
MRQELHALYLCPHGSQLGALPLCVRSSRELWTILLGRSALRELNQIEAELNKHWQRLLEG
LSYYKPPSPNSAEKVKANKDVASPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRD
SLKTVLQDERQSQALILKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYADCVDKLE
KELVTKYRQQFEELYKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFE
MAPSDLLALTKMFKEQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKCA
LDDRRELHQFAQDGLICQDMDRLMLTFGDIPHHAPVLLAWALLRHTLHPEETSSVVRKIG
GTAIQLNVFQYLTRLLRSLASGGNDCTTSTACMCVYGLLSFVLTSLELHTLGNQQDVIDT
ACEVLADPSLPELFWGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYS
FLDKMSFYNELYKHKPHDVISHEDGTLWRRQTSKLLYPLGGQTNLRIPQGTVGQVVLDDR
AYLVRWEYSYSSWTLFTCEIEMLLHVVSTADVIQHCQRVRPIIDLVHKVISTDLSIADCL
LPITSRIYMLLQRLTTVISPPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHQV
SSMSQMISAEGMNAGGYGNLLMNSEQPQGEYGVTVAFLRLITTLVKGQLGSTQSQGLAPC
VMFVLKEMLPGYHKWRYNTHGVREQIGCLILELIHAILNLCHEADLHSSHSPSLQSLCIC
SLAYTEAGQTVINIMGIGVDTIDMVMAAQPRSDGAEGQGQGQLLIKTVKLAFSVTNNVIR
LKPPSNVVSPLEQALTQHENGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPM
SVYACLGNDAAAIRDAFLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDG
SDGSKEFSLGVWSCLHAVLELIDSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLR
TKPKFWENLTSPLFGTLSPPSETSEPSVLETCALIMKIICLEIYYVVKGSLDQSLKDTLK
KFSSEKRFAYWSGYVKSLAVHTADTEGSSCTSLVEYQMLVSAWRMLLIIATSHAEVMHLT
DPAVRRQLFLDVLDGTKALLLVPTSVNCLRLGSMMCTLLLILLRQWKRELGSVDEILGPL
TEILEGVLQADQQLMEKTKAKVFSAFITVLQMKEMRVSDIPQYSQLVLNVCETLQEEVIA
LFDQTRHSLASGGAAEDKDSMETDDCSRPRHKDQRDGVCVLGLHLAKELCEVDEDGDSWL
QVTRRLPILPTLLTTLEVSLRMKQNLHFTEASLHLLLTLARTQQGATAVAGAGITQSICL
PLLSVYQLSSNGTVQTPSTSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVG
VHQERTLQCLSAVRTVQSLACLEEADHTVGFILQLSNFMKEWHFHLPQLMRDVQVNLGYL
CQACTSLLHSRKMLQHCLQNKNGDGIPSAVAPRVQRLPAAATAAPSCSSKQPAADTEASE
QRALHTVQYGLLKILSRTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEV
APSFGTLLATVNVALNMLGELDKKKEPLTQAVGLSTQAEGTRTLKSLLMFTMENCFYLLI
SQAVRYLRDPAVHPRDKQRMKQELSSELSTLLSSLSRYFRRGGPSSPAAGVLPSPQGKST
SLSKASPESQEPLIQLVQAFVRHVQR
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaggagctgcacgcgctttatctgtgtccccacggctcccagttaggtgctctt
cccctctgtgtcaggagcagcagggaactgtggacaattctgcttggaaggtcagctctg
agagagctgaatcagattgaggcagaactgaataaacattggcagcggctcttagagggg
ctgtcctactataaacctcccagtccaaattcagctgaaaaagtgaaagctaataaagat
gtggcttcaccattgaaggaactgggtttaagaatcagcaagtttttgggtcttgacgaa
gaacagagtgtgcagttgctccagtgttaccttcaagaggattatagaggtactcgggac
tcactaaagacggtactgcaagatgagaggcagagccaggccttaatcctgaagattgca
gattattactatgaagaaagaacctgtattcttcgttgtgtcttacaccttctcacttat
ttccaagatgaaagacacccctatagggttgaatatgcagactgtgttgataaattggag
aaggaactagtcacaaaatacagacagcagttcgaagagctttataaaactgaagcacca
acttgggagacacatggaaacctcatgactgagcgccaggtatctcgctggtttgttcag
tgccttcgggaacagtccatgctgctagaaattattttcctttattatgcatactttgag
atggcacctagtgatctgttggcattaaccaagatgtttaaagagcaaggatttggtagt
aggcagaccaacaggcacctggtggatgagaccatggaccctttcgtggataggattggc
tacttcagtgcccttatcctggtggaaggcatggatattgaatccttgcataagtgtgct
ttggatgacagaagagaactgcaccagtttgcccaggacgggcttatttgtcaggatatg
gaccgtttgatgttgaccttcggggacattccacaccatgccccagtgcttttggcctgg
gctcttctccgtcacaccctgcatccagaagagaccagcagcgttgtccgaaagataggc
ggcacagccatccagctgaacgtatttcagtacttaacccgactgctccgctcgctggcc
agtgggggaaatgattgtaccaccagcaccgcgtgcatgtgtgtgtatggactgctctct
ttcgttctcacctcgctggagctgcacacactgggcaaccagcaggatgtaattgacaca
gcatgtgaagtcctggcagatccttctcttccagaactattctggggaacagagccaacc
tctgggctcgggatcattctggacagtgtatgtgggatgtttccccatctcctctcccca
ctcctgcagttgctacgagccctcgtatcaggaaagtctactgccaaaaaggtgtatagt
ttcttggataagatgtctttctacaatgaactttacaagcacaagccccatgatgtgatc
tcccacgaagatggaactctctggcggaggcaaacgtccaaactcctttaccctcttggg
ggtcagaccaaccttcgcatacctcagggcacagtaggccaggtagtgctggacgacagg
gcttacctggtacgctgggagtactcttacagtagctggaccctctttacctgcgagatt
gaaatgctgttgcatgttgtttccactgcagatgtgatccagcactgccagcgggtcaga
cccatcattgatctggtccataaggtcatcagcacagatctgtccatagcagactgtctc
ttgcccatcacatcccgtatctacatgctgctacagcggctaacgacagtaatctctcca
ccggtggatgtcattgcttcttgtgtcaattgcttgactgttttggctgcccggaaccct
gcaaaggtctggaccgatcttcgtcacacaggctttttaccattcgtggcccaccaggtc
tccagcatgagtcagatgattagtgcggaggggatgaatgctggagggtacggaaacctc
ttgatgaatagtgagcagccccagggcgagtacggcgtcactgttgcctttctacgcttg
atcaccactcttgtcaagggacagcttgggagtacccagagccaagggctggcgccctgt
gtcatgtttgtgctgaaggagatgcttcctggctaccacaagtggcgctacaacacccat
ggtgtgagggaacagattggttgcctgatcctggagttgattcatgcaatactgaacctg
tgccatgaggcagacctgcacagcagtcacagccccagcctgcagtctctctgcatctgc
agcctggcctacacagaagcaggacagacagtcatcaatatcatgggcatcggtgtggac
accatcgacatggtgatggctgcccagccccgcagtgatggggcagagggccaggggcag
ggccagctgctgatcaagacagtgaaactggcattctccgtcaccaacaatgttattcgg
ctgaaacctccttctaatgtggtgtcccccctggaacaggctctcacacagcatgagaat
ggtgcccatgggaacaacctcattgctgttcttgccaaatacatctaccacaaacatgat
cctgctttgccacgtcttgccatccagctgttgaaacgtctggccacggtggccccaatg
tcagtgtacgcctgcctgggcaatgatgcggctgccattcgagatgccttcctgacccga
ctgcagagcaagattgaggacatgcgcatcaaagtcatgattctggagttcctcacggtt
gcagtagagactcagccaggcctcattgaactgtttctgaatctggaggtgaaggatggc
agcgatggctccaaggaattcagccttggggtatggagctgtctccacgccgtgctggag
ctgatcgattcccagcagcaggaccgctactggtgtccgcccctgctgcatcgtgcggcc
attgcctttctgcatgccctgtggcaggaccggcgggacagtgccatgctggtcctcaga
actaaacccaaattttgggagaacttaaccagtccactgtttggaaccctttctcctccc
tcagaaacatctgagcccagcgtcctggaaacctgtgccctcatcatgaagataatttgc
ttggaaatatactatgtagttaagggctctttagatcagtctttaaaagatacacttaag
aaattttccagcgagaaacgctttgcctactggtcaggatatgtcaagtcattggcagtt
cacacagcagacacggagggcagcagctgcacctccctggtagagtatcagatgctcgtc
tccgcctggaggatgctcctcatcatcgccaccagtcatgcagaggtaatgcacctgact
gaccctgcagtgcgtcgccagctctttcttgacgtgcttgatgggaccaaagcattactc
ctggtccccacctcggtgaactgcctccgcctcggatccatgatgtgcactctgctgctt
atcctcctccggcagtggaagagggagttaggttctgtggatgaaatccttgggcccttg
acggagatcctggagggagtgctacaggcagaccagcaactcatggagaagaccaaggcc
aaggtgttctcagcattcatcacagtgttgcagatgaaggagatgagagtgagtgacatc
ccccagtactcccagctggtgctgaatgtctgtgagaccctccaggaagaggtaattgct
ctcttcgaccagacccgccatagtctggcgtcaggtggtgccgcagaggacaaggacagc
atggagactgatgactgctcgaggccccggcacaaggaccagcgtgatggggtgtgtgtc
ctgggcctgcacctggccaaggagctgtgtgaggtggacgaagacggtgactcatggctc
caggtgactcgcaggctccccatcctgccaaccctccttaccactctggaggtgagcctt
cgcatgaagcagaacctgcatttcaccgaggcatcattgcacctgctcctcactctggct
cgcacccagcagggagccacagcagtagctggggctggcatcacccagagcatttgtctg
cccctcctgagcgtgtaccagcttagctccaatgggacagtgcagacgcctagcacctct
cggaagtctctggatgccccctcttggccgggggtctaccgcctctccatgtccttgatg
gagcggctcctcaaaactctgcgctacaacttcctgaccgaggccctggacttcgtgggt
gttcaccaggagcggaccttacagtgcctcagtgcggtgaggacagtacagagtctggcc
tgcctggaggaggcagaccacactgtgggcttcatcctgcagctctccaacttcatgaag
gaatggcacttccacctgcctcagcttatgcgagatgtccaggtaaacctgggctacctg
tgccaggcctgcacctccctcctgcacagccgcaagatgctgcagcactgcttgcagaac
aaaaacggggacggcatcccctcggctgtcgccccccgagttcagcggctgcccgctgct
gccactgccgccccctcctgctcttctaagcagcccgctgctgacacggaggcctcggag
cagcgagccttacacacggtccagtacggacttctcaagatccttagcaggaccctggcg
gctctgcgccacttcaccccagacgtctgccaaatcctgctggatcagtccctggacctt
gctgaatacaacttcctctttgccctgagcttcaccactcccacctttgactcagaagtg
gccccctccttcgggacccttctggccacggtgaatgtggccctaaacatgcttggagag
ctggacaagaaaaaggagcccctcacccaggccgtggggctcagcacacaggcggaaggg
accagaacgctgaagtccctcctgatgttcaccatggaaaactgcttctacctgctcatc
tcccaggccgtgcgctaccttagggacccggctgtacatccccgggacaagcagcggatg
aaacaggagctcagctcggagttgagcacgctgctctccagcctctcacgctacttccgc
cggggaggccccagctcccccgctgccggcgtcctcccctcgcctcagggcaagtccacc
tcgctctccaaggccagcccggagagccaggagcctctgatccagctagtacaggccttc
gtgcggcacgtgcaaagatag
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integrated database retrieval system
