Leopardus geoffroyi (Geoffroy's cat): 123593346
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Entry
123593346 CDS
T10761
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
Membrane trafficking [BR:
lgf04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
123593346 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
123593346
NCBI-ProteinID:
XP_045325001
LinkDB
All DBs
Position
D4:18864630..19121060
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AA seq
3167 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLTLGIWGGAVALKNLEIKENALSQLDVPFKVKVG
HIGNLNLTIPWKNLYTQPVEAVLEDIYLLIVPSSQIKYDPVKEEKQLLEAKQYELKRIEE
AKQKVADQEKHQVEKPDTFTEKLITQIIKNLQVKISNIHIRYEDDITNRDNPLSFGISLQ
NLSMQTTDQFWIPCLHDETEKLFRKLIRLDNLFAYWNVKSQLFYLNDYDESLDSLRNGIV
NKNIVPEGYDFVFRPISANAKLQMNRRSDFDFSAPKINLEVELHEIAIEFNKPQYFSIME
LLESVDMMTQNLPYRKFKPDVPLHYHAREWWTYAIHGILEVNVCPRLRMWSWKYIREHRQ
KMKQYKELYKKKITTKKPTGELLLSLQELEKILDVFNITISRQQAEVEVKKAGYRIYREG
AKDSEDNKGWFSWLWTWSEPRSKEQPDVKPGILEEMLTPEEKVLLYEAIGYSETAVDPTL
PKTFEAMKFFVHLKSMSIVLREKRETPELLDIVVEEFSTLIVQRPGAQAIKFETKIDSFH
VTGLPDNSTKPHLLSSLDDATSLFQIIFEINPLDETAAQRCIIEAEPLEMIYDARTVNSI
VEFFRPPKEVNLAQLTSATLIKLEEFRDKTATGLLYIIETQKVLDLKIDLKASYVIIPQD
GIFSPTSNLLILDLGHLKVTSKGRLELPDMKQGGARLEEIMHRAYDSFDVQLTSIQLLYS
TVGDNWKEARKLNVSTQHILIPMHFNVELAKAMVFMDIRMPKFKIFGKLPLISLRISDKK
LQGILELIESIPKPTPATETYAPVKPFQIQRSTSLGTSQISQKVLPLLELPCVEDDSEEE
FFDALCSPLEEPPQSPTGVKSCQKPDYTKNMIQYKIRFEVPEVLIQFYHLVGDCELPVVE
IDVLGLGTDVELRTFDLKANAFLKEFCLKCPEYFDENKKPVYLITTLDNTMEDLLTLEYV
KAEKNLPNLKSTYNNVVQLIKVNFSSLDIHLHTEALLNTINYFNNVLPQLEEKRASVSVA
ETEDKGEVIKKMSLKLPKNEDIITLQILAELSCLQIFIQDQKRNISEIKIEGLDSEIIMR
TSATEINAKLRNIIVLDSDKTALYKKAVYITGKEVFSFKMVSFVDATAGSAYTDMNVVDV
QVTLTVGCIEVVFVTKFLCSILAFIDNFQAAKQALAEATVQAAGMAATGVKELAQRSSRM
SLDVNIKAPVVVIPQSPVSENVFVADFGLITMTNTFHIITESQSNPPPIIDLITIRLSEM
RLYRSQFIDDAYQEVLDLLLPLNLEVIVERNLSWEWYQEVPCFNVNAQLKPMEFILSQED
LTTIFKTLHGNVWYEEGYGASPAGVKDEHGITSGATNASHHLEGTTVVTAAVVEIHSQAS
QVKTTLNMSFKTDYLTMVLYSPSPEQTSFTDVRDPALKLAEFKLENIISTAKMYTDDSVF
SSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDVKYRKVRDGLVTDLVLQEMYIC
ASVEFLLTVANVFLEAFTTGTAIETSVQTWTAKEEVPVQEKEKWEVNIIIKNPEIVFVAD
MTRSDAPALVITTQCEICWKGDRENSTMTAAIKDLQVRACPFLPVKRKGRITTVLQPCDL
FYQATQISANPQVIDISVKSLTLKVSPVIINTVITITSALYTSKETIPEDTASSTAHLWE
KKDTKSLKMWFLEEPNEVENKTPTTELILRGEIIRVNIDSIFIVLEAGVGHRTVPMLLAK
SRFSGEGKNWSSLINLYCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLGIKMKK
KAKKTIVESDTEEENYKVPEYKTVISFHSKDQLNITLSKCGLVMLNNLAKAFTEAATGAS
AVIIRDLAPFIILNSLGLPVSVSPSDSFSVLSVPLARSYVLKNEESLSMDYVGTKDNDHF
NAMTSLSSKLFFILLTPTNHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQVDGVEGSK
KVTIRSPVQIKNHFSIPLSVYEGDTSLGTASPGSEFNIPLTSYRSPLSLKPEDEDYEVCE
RIDFEEIIKNEGTLLKKICRSINAAKKPFIINVVPEKDNLASLSVYSQDGWDLPYIMHLW
PPILVRNLLPYKIAYYIEGIEHRVYTLNEGQSAHICTAQLDKARLHLKLLDYLNHDWKSE
YCIKPNQQDISFINFTCVTEIEKTDLDIAIHVTYNIGQTVVAFHSPYWMVNKTGRMLQYK
ADGIHRKHPPNYKKPILFSFQPKHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAVKCKGL
KMEYQVGVTIDLSSFNITRIVTFTPFYMIENKSKYHISVAEEGNDKWLSLDLEQCIPFWP
EDASNALLVQVERNQGPPKKIHFNKQENCILLRLDDELGGVIAEVNLAEHSTVIRFSDYH
DGAATFLLINHTKSDIVQYNQSSLSEIEDSLPPGKAVFYTWADPVGSRKLKWRCGKSHGE
VTQKDDMMTPINLGKKTIYLVSFFEGLQRIILFTEDPRVFKATYESEKAELAEQEIVLAL
QDVGVSLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSIKHTEKLEKEFKEYTESS
PSEDKVIELDTNIPVRFTPSGTNMKILQPHVIAIRRNYLPALKVEYSTSAHQSSFRIQIY
RIQIQNQIHGAIFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLI
QEMDLRLDLGFVYALAELMTEAEVTEKTEVELFHKDIEAFQEEYKTASLVDSSQVSLYEY
FHISPIKLHLSVSLRSGREEAKDSEKQEGLMAVHSLNLLLKSIGATLTDVQDVVFKLAFF
ELNYQFHTASELQSEVIRHYSKQAIKQMYVLILGLEVLGNPFGLIREFSEGVEAFFYEPY
QGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITNAMAKGVAAMTMDEDYQQKRREA
MNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVAR
PTGGIIDMASSTFQGIKRATESSDEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMEN
GRFAKYKYFTHVMINKTDMLMITKSGVLFVTKGTFGQLTCEWQYSFDEFTKEPFIVHGRR
LRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPRF
NT seq
9504 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtcgtggatgtgttgaaccggttcttgggggactatgtggtg
aacctggacacgtcccagcttactctgggcatctggggaggagctgtggccttgaagaat
cttgaaattaaagaaaatgctctgagtcaactggatgtaccatttaaagttaaagttggt
catataggtaatcttaatcttacaattccatggaaaaacctgtatactcaaccagttgaa
gctgtcctggaagacatttatttactcatagtgccttcttctcaaataaaatacgatcct
gtaaaagaagaaaaacaactcttggaggcaaagcaatatgaacttaagcgaatagaagaa
gcaaaacaaaaagtagctgatcaagaaaaacatcaggtggagaaaccggacactttcaca
gaaaaattaattactcagatcataaaaaatcttcaagtgaaaatttccaacatccatatt
cgttatgaagatgatatcacaaatcgagacaatccattgtcatttggtatttcccttcaa
aatctcagcatgcagacaactgatcaattctggattccatgtttacatgatgaaactgag
aaactctttcgtaagttaatccgattggataacctttttgcctattggaatgtgaagtct
cagttgttttaccttaatgattatgatgaatcattggacagcttgaggaatggtattgtc
aataaaaatattgttccagaaggttatgattttgtgtttcgccccatatctgctaatgcc
aaacttcagatgaatcggcgatcggattttgacttctctgcacccaagataaacctggaa
gttgagttacatgagatagcaattgaatttaataaaccacagtatttcagcattatggag
cttcttgagtcagttgatatgatgacgcaaaatctgccatataggaaattcaaacctgat
gtacctcttcactatcatgccagagaatggtggacttatgctatacatggtattctggaa
gtaaatgtctgtccccggttacggatgtggtcatggaagtatattagagaacacaggcaa
aaaatgaagcagtataaagaactgtataaaaaaaagataacaactaaaaagccaactggt
gaacttctcctctctttgcaggagttggaaaagatcttggatgtatttaatataactata
tcaagacaacaggcagaagttgaggtaaagaaggctggatacaggatttacagagaagga
gcaaaagattcggaggataataaaggatggtttagctggctgtggacttggtcagaacca
agaagtaaagaacagccagatgttaagcctggaattcttgaagaaatgttgacacctgaa
gaaaaagttttactctatgaagcaattggctacagtgaaacagcagttgatccaaccttg
cctaaaacatttgaagccatgaagttttttgttcacttgaaaagtatgtctattgttcta
agagaaaaacgagaaacacctgaactgttagatattgtagtggaagaatttagcactttg
atcgtgcaaagaccaggagcacaagcaattaaatttgaaaccaaaattgattcatttcat
gtcactggcttaccagataattcaacaaaacctcacctcctttcttccttggatgatgct
acgtcactcttccaaattatatttgagataaatccgttagatgaaactgctgctcaaagg
tgtatcatagaagctgaacctttagaaatgatatatgatgcaagaacggtgaatagtata
gtggaatttttcagacctccaaaagaggtaaatctagcacagctcacttcagcaactttg
attaaacttgaagagtttcgtgacaagacagcaacaggtctactatatattattgaaaca
cagaaagttcttgatctcaaaattgatttgaaggcttcatacgttattatcccacaggat
ggaatttttagccctacgtcaaatttacttattttggatcttggtcatctaaaggtgaca
agtaaaggtcgtttggagttaccagatatgaaacaaggtggggccagacttgaagagata
atgcatagagcttatgattcctttgatgttcagcttacaagcatacagctgctttacagc
acagttggtgataattggaaagaagctcgaaaacttaatgtatctacacaacatattttg
atacctatgcacttcaatgtggaacttgctaaggccatggtttttatggatataaggatg
cccaaattcaagatatttggaaagttaccactgatttctttacgaatctcagataaaaaa
ctgcaagggattttggaattgatcgaaagtattccgaaacccacacctgcaactgaaaca
tatgcccctgtcaaaccatttcagattcaaaggtcgacttctttgggaacatcacagatt
tcacagaaagtgcttcctctcctggaacttccatgtgtcgaagatgattcagaggaagaa
ttttttgatgcactgtgtagtcccttggaagagcctcctcagtctcccactggagttaaa
agttgtcaaaagccagattatacaaaaaatatgattcagtataaaataagatttgaagtg
cccgaggttttgattcagttttatcaccttgttggagattgtgaactacctgtggtagaa
attgatgttttaggactgggcacagatgttgagcttagaacatttgatttgaaagcaaat
gcctttttgaaagagttctgcttaaaatgcccagaatactttgatgaaaacaagaaacca
gtttatttgattacaacgctggataatacgatggaagatctgctaacactggagtatgtg
aaggcagaaaagaatctacctaatttgaaaagtacttacaacaatgttgtgcaactaatt
aaggtgaatttttcctctttggatattcatttacatactgaagcacttctgaatacaata
aactattttaataacgtactcccacaactagaagaaaaacgagcctctgtgtctgttgcg
gagactgaagacaaaggagaggtcattaaaaaaatgtctttaaaactacccaagaacgaa
gatattattaccttgcagattttggcagaattatcttgtttacagatctttattcaagat
cagaaacgtaacatttctgaaattaagattgaagggcttgattctgagataataatgagg
acttcagccactgaaataaatgcaaagctaaggaatataattgtcttggattctgataaa
acagctttatacaaaaaggccgtttacatcactggaaaagaagttttcagcttcaaaatg
gtctcttttgtggatgcaactgctggttctgcatacacagatatgaacgtggttgatgtt
caagttactttaactgttggttgcattgaagtagtttttgtcacaaaatttctatgttct
atattggcttttatagataattttcaagcggctaaacaagctttggctgaggctactgtt
caggcagcaggaatggcggctactggtgtaaaagaactggcacagaggagttctagaatg
tcattggatgttaacatcaaagccccagtggtggtcatcccacagtctccagtttctgaa
aatgtttttgttgctgattttggactaattacaatgacaaatacattccatataataaca
gagagccagagcaaccccccacccattattgatttgataacaataaggctgagtgaaatg
cgactatacaggtctcaatttattgatgatgcataccaggaagtactggatctgctactg
ccgttaaatcttgaggtgattgttgagcgaaatttatcttgggagtggtaccaggaagtt
ccttgttttaatgtaaatgctcagctaaagcccatggagttcattcttagtcaagaagat
ttaacaactatttttaagacattacatggcaatgtatggtatgaagaaggttatggtgcc
tcacctgcaggagtaaaagatgaacatggtattactagtggagctactaatgcttcacac
catttagaaggaacaactgtagtgacagctgctgtggtagaaatacattcacaggcctct
caagttaagacaacgctaaatatgagtttcaaaactgattatctcaccatggtactatat
agtccaagtcctgagcagacttcctttacagatgttcgtgatcctgctctgaaacttgct
gaatttaagttggagaatattataagtactgcaaagatgtatacagatgactcagtattt
tcttccttctcattaaaaaactgtattttagatgataaaagacctcatgtcaagaaggca
actcctagaatgataggactgacagttgggtttgacaaaaaggacatgatggatgtaaag
tataggaaagtcagagatggtttggtgactgatttagtccttcaagaaatgtatatttgt
gccagtgtagaatttctgctgacagttgcaaacgtctttcttgaggccttcaccacaggc
acggctatagaaaccagcgttcaaacatggactgctaaggaagaagtacctgtacaggaa
aaagagaagtgggaagttaatattattattaaaaatcctgaaattgtgtttgtggctgat
atgacacgaagtgatgctcctgccttagtcattacaacacaatgtgaaatttgttggaaa
ggtgaccgtgagaacagtacaatgactgctgccattaaagatcttcaagtgagagcatgc
ccatttcttccagtcaagagaaaaggcagaatcactacagttttgcagccctgtgactta
ttctatcaagctactcaaataagtgcaaatccacaagtgattgatatatcagtaaaatcc
ttgacactgaaggtttcaccagttatcataaatactgtgattaccataacgtcagcactt
tatacatctaaggaaaccatccccgaggatactgcttcttctacagcacatttatgggaa
aagaaggatactaagagtttaaaaatgtggtttcttgaagaaccaaatgaagttgaaaac
aaaactcccacaactgaattgattctcagaggagagatcataagagtgaacattgattct
atttttatagttcttgaggctggagttggtcacagaacagtgcctatgctgttagcaaag
tcacgtttttcgggggaaggcaaaaactggagttccttgataaatctatactgtcagctt
gaattagaagtccattattacaatgaaatgtttggtgtatgggagcctttgcttgaacct
ttagaaattgatcagactgaggattttagaccatggaatcttggaatcaagatgaaaaag
aaagcaaaaaagactattgttgagtcagatactgaagaagaaaattacaaagtgccagaa
tataaaactgttatcagtttccattcaaaagaccaactaaacattacgttatccaaatgc
ggccttgtaatgttaaataatttagccaaggcatttacagaagccgccactggagcttca
gctgtcatcatacgggatctagcgccatttattattttaaattctcttggacttccggtc
tctgtttcaccaagtgattcttttagtgtactcagtgttccgttggcaagatcctatgta
ttgaaaaatgaagagagtttaagtatggattatgtaggaactaaagacaatgatcatttc
aatgcaatgaccagcctaagcagtaaactcttctttattcttcttacacccactaaccac
tctactgctgataagattcctttaacaaaagtgggacgacgactatacaccgtaagacac
agagagtctggggttgaaagatctattgtttgtcaagtcgatggagtggaaggaagtaag
aaggtaacaattcgttctccagtgcagattaaaaatcatttttcaattccactttctgtt
tatgaaggggacacttcattgggaacagcttcacctggaagtgaattcaacataccatta
acatcttaccgatcacctctttctctgaagccagaagatgaggactatgaagtgtgtgaa
agaattgactttgaagaaattataaaaaatgaaggcactcttctaaagaagatatgtaga
tctataaacgctgctaagaaaccatttattattaatgttgtcccagaaaaagataatttg
gcatctctctccgtgtattcacaagatggttgggacttaccatacataatgcatttgtgg
ccgcctatcctcgtccgaaatcttcttccttacaaaattgcttattatatagaggggatt
gaacacagagtttatactctaaatgaaggacagtcagcccatatttgtactgcgcagttg
gataaagccagactacatttaaaattacttgactatcttaatcatgattggaaaagtgaa
tattgtataaaacctaatcagcaagatattagtttcatcaatttcacctgtgttacagaa
atagaaaagactgatttagatattgctatccatgtaacttacaatattggccagaccgtt
gtggcatttcatagtccttattggatggtcaataaaactggtcgaatgttacagtataaa
gcagatggaattcatcgaaagcatccacctaattacaaaaagcccattcttttttctttt
caaccaaagcatttttttaataacaataaggttcagcttatggtaactgatagtgaattg
tcagatcagttttcaattgatactgttgggagtcatggagctgttaaatgtaaaggcctg
aaaatggagtatcaagttggtgtcactatagaccttagcagttttaacattaccagaatt
gtgacttttacccctttttacatgattgaaaacaaaagcaaataccatatatcagtggct
gaagagggaaatgataaatggctctctcttgatttagagcagtgtattcccttttggcct
gaggatgcttctaatgcactgcttgttcaagttgaaagaaatcaaggccctcccaaaaag
atacattttaacaagcaagaaaattgtattttattgcgtctggatgatgagcttggaggt
gttatagcagaggttaatttggctgaacattctacagttattagattttcagattatcat
gatggagcagctacattcctgttaataaatcacaccaagagtgacattgttcagtacaac
caaagttctctcagtgaaatagaagattcccttcctcctggaaaagcagtattttataca
tgggctgatccagtgggctctagaaagctgaagtggagatgtggaaaaagccacggtgaa
gtaacacaaaaggatgatatgatgacacctataaatttggggaaaaagaccatttattta
gtttcattcttcgaaggcttacagcgcattattttattcactgaagatccaagggtattt
aaagcaacatatgaaagtgagaaagcagagttagcggagcaagaaattgtgttggcctta
caagatgttggagtttccctcgtcaacaattacacaaagcaagaagtagcctatattggc
attacaagttctgatgtggtttgggagacaaagcccaagaagaaggcaagatggaagcca
atgagtataaagcacactgagaagttagaaaaagaatttaaggaatatactgaatcttca
ccttcagaagataaggttattgagttggacactaacattccggttcgcttcacacctagt
ggcactaacatgaaaattctgcaaccacatgtaatagccatacgaagaaattatcttcca
gcattaaaagtagaatatagcacatctgcacatcagtcatcatttagaattcaaatttac
agaatacagatccaaaaccagatacatggtgctatatttccttttgtgttttatccaatt
aaacctcccaagtcggtcaccatggattcagctccaaaacccttcacagatgtcagtatt
gttatgagatctgcaggccattcccagatttcacgtattaagtacttcaaggtgttgatc
caagaaatggatctcagattagatcttgggtttgtctatgctttagcagaacttatgaca
gaagcagaagtgactgaaaaaacagaggttgaactttttcataaagatatagaagctttc
caagaagaatataaaacagcttcattagtagattcatcacaagtcagtctctatgaatac
tttcatatatctcccatcaagttgcacttaagtgtttcactgcgttcgggtagagaagaa
gctaaagattcagaaaaacaggaaggactgatggcggttcattccttaaatcttctgctg
aagagtattggtgcgactcttacagatgtacaagatgtagtttttaagcttgcatttttt
gaactcaactatcagttccatacagcatctgaactacaatctgaagtaataagacactat
tcaaaacaggccattaagcaaatgtacgtactcattcttgggcttgaagttttgggaaat
ccctttggcttgattagagaattttctgaaggtgtggaagcatttttttatgaaccttac
cagggagccatccagggtcctgaagagtttgtggaggggatggccctaggactgaaggca
ctagttggtggagctgtcggtggattagctggtgctgcctctaaaatcaccaatgctatg
gcgaaaggggtggcggctatgactatggatgaagactaccaacagaagagaagagaagcc
atgaataagcaaccagcgggtcttagagaaggcatcactcgtggaggaaaaggcttagtt
tctggttttgtaagtggcataacaggaattgttacaaaaccaatcaaaggagctcaaaaa
gaaggagcagctggtttcttcaaaggtgttgggaaaggtttagttggagcagtggcaagg
ccaaccggaggcatcatagacatggctagcagtacatttcagggaataaaaagagctaca
gagagttctgatgaagtggagagcctgcgaccccctcgattctttaacgaggatggagtt
atcagaccttacaggttgagggatgggactggcaaccaaatgttacaggtcatggaaaat
ggaagatttgcaaaatacaagtattttacccatgtcatgatcaacaaaacagatatgtta
atgataactaaaagtggtgtcttgtttgtaacaaaaggaacatttggacagcttacatgt
gagtggcagtatagttttgatgagtttaccaaagagcccttcattgttcatgggagaaga
ttacgcattgaagcaaaggaacgagtgaagtctgtatttcatgccaaagagtttggaaaa
ataattaacttcaagaccccagaagatgctaggtggatcctcacgaaactagaagaagca
agagaaccttccccgagattctga
DBGET
integrated database retrieval system
