Leopardus geoffroyi (Geoffroy's cat): 123594073
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Entry
123594073 CDS
T10761
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
123594073 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lgf00536
]
123594073 (COL25A1)
Glycosaminoglycan binding proteins [BR:
lgf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123594073 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
123594073
NCBI-ProteinID:
XP_045326645
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All DBs
Position
B1:113781043..114249504
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AA seq
693 aa
AA seq
DB search
MLVKKHAGKGGGREPGSEDPRQRCAWTVPPCTSLAALLSVVALMSCLYLGVKTNDLQARI
AALESAKGDPSIHLLPDRLDQLKAVVQEKVEELLAQRSYEHMAKIRIAREAPSECNCPAG
PPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIK
RRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGESGKPGEQGLMGPLGPPG
QKGSVGMPGIPGVNGQKGEPGLPGTVGQNGIPGPKGEPGDRGEKGDAGESGPKGDTGEKG
DPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGE
RGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKGDRGEKGDSGALGPRGPPGQKGDQ
GATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEPGSPGIPGVDGEQGLKGS
KGDMGDPGMPGEKGGIGLPGLPGANGMKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPGPM
GPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPHGPA
GPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDVGEKGEKGEKGKKGKK
GPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaagaagcatgcggggaaaggtgggggccgggagccaggctccgaggacccg
aggcagcgttgtgcctggaccgtgccgccgtgcacctccctggcggcccttctctcagtg
gtggccctgatgtcttgtctgtaccttggggtgaaaaccaacgacctccaggcgaggatc
gctgctctcgaatccgcaaaaggggacccttccattcatctgctccctgatcgcctggat
cagctcaaagcagtggtgcaagagaaagtggaggaacttctggctcagagatcctatgaa
catatggctaaaataagaatcgcaagagaagcaccttcagagtgcaactgcccagcaggc
cctccggggaaacgaggtaagaggggccgaagaggagaatctggtcctcctggccaacct
ggtcctcagggccctcctggtccaaaaggtgataagggagaacaaggtgatcagggacct
cggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcagctcattaaa
cgccgcctcattaagggtgaccaagggcaggctgggcctccaggacctccaggccctccc
ggcccaagagggcctcctggggacacagggaaagatggccctcgtggaatgccaggagtg
cctggtgaatcagggaaaccaggagaacaaggcttgatgggtcctctggggcctccagga
caaaagggttctgttggaatgcctggaattccaggggtaaatggtcaaaagggtgagcct
gggttgcctggaacagtaggacaaaacggaataccagggccaaagggagaacctggagat
cgaggagaaaagggagatgctggagagagtggccccaaaggtgacacgggcgaaaagggt
gaccctggatcatctgcggcaggaattaagggggaacctggagaatctggtcgtccaggg
caaaagggtgaaccagggcttcctgggcttcctggacttccggggataaagggagaacca
ggtttcattggtcctcaaggagaaccaggcttaccagggttaccaggaacaaagggtgaa
cgtggggaggcagggcctcctggaagaggtgagcgaggggagcctggagcccctggacca
aaggggaaacaaggtgaatcaggaactagaggcccaaaggggtcaaagggtgatcgtgga
gagaaaggagactctggagccctgggaccaaggggtccacctggtcaaaagggagatcaa
ggagccactgagatcatagactacaatggcaacctccacgaagccttgcagaggattacc
accttaactgtcacgggtccccctggaccacctggacctcaaggactacaagggccaaag
ggagagccaggatctccaggaatcccaggagttgatggagagcagggacttaaaggctca
aagggagacatgggggacccaggtatgccaggtgaaaaaggaggaatcggacttcctgga
ttaccgggtgccaatggaatgaaaggagaaaaaggagactctggattaccaggtcctcag
ggtccttccatcataggcccaccaggcccaccaggcccccatggcccaccaggccccatg
ggacctcatggacttcctggaccaaagggtgaaccagggttaaatggtgttaaaggattg
aagggtgaaccaggtcaaaagggtgacagaggaccccttggtcttccaggagcatctggc
ttagacgggaagccaggatcccggggtacagatggccctatgggaccccatggccctgca
ggtcccaaaggagaaagaggtgaaaaaggagctatgggagagcctggacccagaggaccc
tatggtctgcctgggaaagatggagagcctggtcttgatggcttccctggtccacgaggc
gagaagggtgatgtaggagaaaagggagaaaagggggaaaagggaaagaaaggcaaaaag
gggcctaaaggggagaaaggagaacagggtgctcctggattagatgcaccttgcccgttg
gggccagatggattacctatgcctggctgttggcaaaagtga
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