Leopardus geoffroyi (Geoffroy's cat): 123595132
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Entry
123595132 CDS
T10761
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04151
PI3K-Akt signaling pathway
lgf04382
Cornified envelope formation
lgf04510
Focal adhesion
lgf04512
ECM-receptor interaction
lgf04518
Integrin signaling
lgf04820
Cytoskeleton in muscle cells
lgf04926
Relaxin signaling pathway
lgf04933
AGE-RAGE signaling pathway in diabetic complications
lgf04974
Protein digestion and absorption
lgf05146
Amoebiasis
lgf05165
Human papillomavirus infection
lgf05200
Pathways in cancer
lgf05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
123595132 (COL4A6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123595132 (COL4A6)
04518 Integrin signaling
123595132 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123595132 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
123595132 (COL4A6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
123595132 (COL4A6)
09154 Digestive system
04974 Protein digestion and absorption
123595132 (COL4A6)
09158 Development and regeneration
04382 Cornified envelope formation
123595132 (COL4A6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
123595132 (COL4A6)
09162 Cancer: specific types
05222 Small cell lung cancer
123595132 (COL4A6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
123595132 (COL4A6)
09174 Infectious disease: parasitic
05146 Amoebiasis
123595132 (COL4A6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
123595132 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lgf04147
]
123595132 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
lgf00536
]
123595132 (COL4A6)
Exosome [BR:
lgf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123595132 (COL4A6)
Glycosaminoglycan binding proteins [BR:
lgf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123595132 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
123595132
NCBI-ProteinID:
XP_045328403
LinkDB
All DBs
Position
X:complement(89244262..89540109)
Genome browser
AA seq
1705 aa
AA seq
DB search
MHPGLWLLLVTLCLTEELAGAGEKSYGKPCGGQDCSGGCKCFPEKGARGRPGPIGIQGPT
GPQGFAGPSGLSGLKGERGSPGPLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGPP
GLDGCNGTQGDVGYPGPDGYPGLLGPPGLPGQKGSKGEPVLAQSSFKGIKGEPGLAGLDG
ITGPQGAPGPPGAVGPMGPPGLQGPPGPPGFPGPDGNMGLGFQGEKGVKGDVGLPGPAGP
PPSTGELEFMGFPKGKKGSKGEPGLPGLPGISGPPGLPGFGTAGEKGEKGIPGLPGPRGP
MGLEGLRGPPGSQGKKGSSGFPGFNGFPGIKGEKGGIGLPGPDVYIDTDGAVISGYPGDP
GVPGLPGLKGDEGVQGLPGPSGLPGLPALPGVPGALGHQGVPGLKGDKGNPGRTTVGAAG
PPGRGGLPGLPGLAGPPGRTFETGTLQNTEPGFPGLRGEQGPKGNPGLKGIKGDSGFCAC
DGGVPNIGPPGEPGLPGSQGLIGLPGLKGTRGDPGPGGTQGPSGTPGLFGPRGPAGRKGE
KGEPTLSSRSRMPGERGDPGPQGLPGKTGIPGKDGVPGLPGLPGLPGDGGQGFPGEKGLP
GLPGEKGHSGPAGPPGNGLPGSPGPRGLPGDQGIDGLPGKQGLPGLPGDCCCRESIGKGG
LDTEGGVTLPCIIPGSYGPSGLPGAPGFPGPKGARGLPGIAGQPGLRGNKGKAGSPGLVH
LPELPGFPGPRGEKGLPGFPGLPGKDGLPGKIGSPGLPGSKGASGDIYGAENGAPGEQGL
QGLPGDQGFPGDPGLPGPKGLPGKSGLLGPKGERGRPGTPGHVGQPGSPGPDGRFGIKGK
PGLPGAPGFPGPSGHPGKKGLRGETGPPASAGKRGLPGLKGLPGSPGLIGFLGNSGLPGS
TGLPGLPGPKGEKGSAGLVGFPGIPGLPGIPGASGLKGISGSAGKVGPSGRAGSAGKKGD
RGDPGPAGIPSPQPPILNLQLKGDKGSRGSAGSDGFPGPRGDKGEAGPPGPPGLPGVPGL
PSIIKGLNGKPGPPGSIGLWGLPGLKGSPGITGFPGIPGASGSQGLNGAPGLPGASGLLG
SKGDQGQTLGISGSLGLKGQPGESGFKGVKGKDGLAGDVGFPGSKGEDGKVGISGDVGLP
GSPGLPGIAGMRGNPGLPGSAGHPGATGPLGAPGLIGTKGFPGLPGLHGLNGLPGTKGTH
GTPGPSITGVPGPAGLPGPKGEKGSPGIGIGAPGKPGVKGQRGGRGFPGFQGPAGLPGAP
GLSLPSVIGGQPGEPGRPGLDGERGRPGPPGPPGPPGLSSDQGDPGDPGFPGIPGRQGPK
GDQGIPGFSGLPGELGLKGMRGEPGFMGIPGKVGPPGDPGLPGMKGKAGPRGFSGPRGAP
GQTPIAEAVQVPPGPMGQPGMDGIPGLTGDPGVQGPVGLQGSKGLPGIPGKDGLNGLIGP
PGPLGDPGLPGLQGPPGLEGAPGKKGPFGTAGMPGQSARVGYTLVKHSQSEQVPLCPVGM
SQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYAGRNDKSYWLS
TTAPIPMMPVGQTQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWSSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFREE
PVSETLKAGQLHTRVSRCQVCMKSL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctgggttgtggctgctcctggttacgttgtgcctgaccgaggaactggccgga
gcgggagagaagtcttatggaaagccatgtggaggccaagactgcagtggaggctgtaaa
tgctttcctgagaaaggagcgagagggcgaccgggaccaattggaattcaaggtccaaca
ggtcctcaaggatttgctggccctagtggtttatcagggttgaaaggagaaaggggctcc
ccaggtcccctgggaccatatggaccaaaaggagataagggtcccatgggagttcctggc
tttcttggcatcaatgggattccgggccacccaggacagccagggcccagaggcccacct
ggcctggatggctgtaatggaactcaaggagatgttggatatccaggccccgatggctat
cctgggcttcttggaccacccgggcttcctggccagaaaggctctaaaggtgaacctgtc
cttgcccaaagtagtttcaaaggaataaagggggagcctggactggctggactggacgga
atcactggcccacagggagcacccggacctccaggagctgtaggacccatggggccacca
ggattgcaaggtcctccaggtcctcccggtttccctggtcctgatgggaatatggggtta
ggtttccaaggagagaaaggagtcaagggggatgttggcctcccaggccctgcaggaccc
ccaccatctactggagaactggaatttatgggatttcccaaagggaagaaaggatccaag
ggtgaaccagggcttccaggtttaccaggaataagtggccctccaggtctcccaggattt
ggaactgctggagaaaagggtgaaaagggaatccctggtttgccaggacctaggggtccc
atgggtttagaaggactccgaggccccccagggagtcagggcaagaaagggtcctcaggt
ttccctggatttaatggatttccaggaattaagggcgaaaagggtggcattggcttgcca
ggcccagatgtttacatcgatacggatggtgctgtgatctcaggttaccctggagaccct
ggtgtgccaggcctcccaggacttaaaggagatgaaggcgtccagggcctgcctggacct
tccggcctccctggcttgccagctttaccaggtgtcccaggtgccctagggcaccaagga
gttccaggtctcaagggggacaaaggaaacccaggccgcaccacagttggggcagctggc
ccccctggcagaggcggtttgccaggcttaccaggcctagcaggcccacctggtcgaaca
tttgagactggaacactacagaacacagagccagggttccctggtctccgaggagaacaa
ggtccaaaaggaaacccaggcctcaaaggaataaaaggcgactcggggttttgtgcttgt
gatggcggtgtccctaacattggaccacctggggagccaggcctgcctgggtcacaaggt
ctcattggccttccaggccttaaaggaaccagaggagatccaggccctgggggtacacag
ggcccatcagggactccaggtttatttggacctcggggtcctgcaggccgcaaaggagag
aaaggggagccaactctcagttcaagatcaaggatgccaggggagcggggtgatcctggc
ccccaggggctccctggtaaaacaggaatcccagggaaggatggagtaccaggtttacca
ggtctgccaggcctcccaggtgatggtggacagggcttcccaggtgagaaggggttacca
ggacttcctggtgaaaagggccacagtggtccagctggtcccccaggaaatggactgccg
ggatctcccggacctcgtgggcttcctggagatcaaggaatagatggattaccagggaag
caaggcctccctgggcttccaggtgactgttgctgcagggagagcattggtaaaggaggc
ttagacacagagggaggggtcaccttgccgtgtataattcctggatcatacggtccatca
ggcttaccaggagctcccggattcccaggtcctaagggggcccgtggcctccctgggatt
gcaggccagcctggattgcgtggaaataaaggaaaggctggaagtccaggattagttcac
cttcctgaactgccaggatttcctggacctcgtggggagaagggcttgcctgggtttcct
gggctccctggaaaagatggcttgcctgggaaaattggcagtccaggtttaccaggttcc
aagggagcctctggtgacatctatggtgctgaaaatggtgctccgggggagcaaggccta
cagggattgccaggggaccaaggatttcctggagaccctggccttccaggacccaagggt
ctgcctgggaagtcaggcttgctgggccccaaaggtgaacggggcaggcctggaacacca
ggccacgtgggacagccagggtccccagggcctgatggccgattcggcatcaagggcaaa
cccgggctcccaggagcaccaggctttccaggcccttcaggacatcctggaaagaaaggt
ttaagaggcgagacaggtccccctgcatcagctggaaagagaggcctgcctgggttgaaa
ggccttccaggatctccagggctgattggcttcttggggaactcaggcttgccagggagc
actgggttgccaggcctgccgggtccaaagggtgagaagggatctgctgggctggtaggt
tttccagggataccaggtctccctggtattcctggtgcaagtggattaaagggcatttct
gggtcagccggaaaggtgggaccatctggacgggctggtagtgctggtaaaaaaggagac
agaggtgacccagggccagctggaatccccagtccacaacctccaatcctgaacctgcag
ctgaaaggagacaaaggctctagaggctcagctggatctgacggatttcctgggcccaga
ggtgacaaaggagaggctggccccccagggccaccaggcttgcctggagttcctggcctc
cccagtatcatcaagggacttaatgggaaaccaggcccccctggatccattggattatgg
ggcttacccggccttaaagggtcccctggaattacaggtttcccaggaataccaggagca
agtggttcacagggtctcaatggagctcccggactcccaggagcatctggtctcctaggt
tcaaaaggagatcaaggccagacccttggaatttccggtagcctgggactcaagggacaa
cctggggaatctgggtttaaaggtgtgaaaggaaaagatggactagctggtgacgtgggt
ttcccaggaagcaaaggtgaagatggcaaagttggtatttctggagatgttggccttcct
ggctccccaggactccctgggattgcaggcatgagaggaaatccagggctaccaggttct
gcaggccatccaggggccactgggcccctgggagcccccggcctaataggaaccaaaggt
ttccctggacttcctggtttacatggactgaatgggcttccaggaaccaagggaacccat
ggaactccaggacctagtataaccggtgtgcctgggccagctggcctgcctggtcccaaa
ggggaaaaaggttctccaggaattggcatcggagccccagggaagccaggagtgaaagga
cagagaggtggtcgaggtttcccaggcttccagggacctgctggtctgcccggtgcccca
ggcctctccttgccttcagtcataggaggacagcctggcgaacccgggcgaccaggccta
gatggagagcgaggccgcccaggccctccagggcccccagggccccctgggctatcctct
gatcaaggtgaccctggagaccctggcttccctggaattcctggccgtcaagggcccaag
ggagaccaaggaattccaggtttctctggccttcctggagagctaggactgaaaggcatg
agaggtgagcctggcttcatggggattccaggcaaggttgggccacctggagacccagga
cttcccgggatgaaggggaaggcagggccaagaggcttttccggaccccggggtgctcct
ggacaaacaccaattgcagaagctgtccaggttcctcctggacccatgggtcaaccgggc
atggatggcatccctggcctcacgggagaccctggggttcaaggccctgtaggcctacaa
ggctccaaaggattacctggcatccctggaaaagatggtctcaacggactcattggccca
cctgggcctcttggtgatcctggtctccctggactgcaaggccctccaggactcgaagga
gctccagggaagaagggtcccttcgggacggctggaatgcctgggcagagcgcgagagtg
ggttacacgttggtgaagcacagccagtcggaacaggtgcccctgtgtcccgtcgggatg
agccagctgtgggtgggttacagcttgctgttcgtggaggggcaggagaaagcccacaac
caggacctgggatttgctggctcctgcctgccccgcttcagtaccatgcctttcatctat
tgcaacatcaacgaagtgtgccactatgctgggcgcaatgataaatcctactggctgtcc
accaccgcccccattcccatgatgcccgtcggccagacccagattccccagtacatcagc
cgctgttctgtgtgtgaggcaccctcacaagccattgctgtgcacagccaggacatcacc
atcccgcagtgccccctgggctggagcagcctctggattgggtactccttcctcatgcac
actgctgctggcgccgagggcgggggccagtccttggtctcacccggttcctgcctggag
gattttcgtgccactcctttcatcgagtgcagtggggcccggggcacctgccactacttt
gccaacaagtacagtttctggctgacaacagtggaagagaggcagcagtttagggaggaa
cctgtatctgaaacactgaaggctgggcagctccatacccgggtcagccgctgccaggtg
tgtatgaaaagcctgtag
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integrated database retrieval system
