Leopardus geoffroyi (Geoffroy's cat): 123597098
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Entry
123597098 CDS
T10761
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lgf03036
]
123597098 (CHD5)
Chromosome and associated proteins [BR:
lgf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
123597098 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
HDA2-3
ResIII
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
123597098
NCBI-ProteinID:
XP_045331380
LinkDB
All DBs
Position
C1:complement(3947385..4011189)
Genome browser
AA seq
1947 aa
AA seq
DB search
MRGPLGTEEELPRLFADEMENEDEMSEEEDGLGGFDDCFPEEPVGLPKKKKSKKLKENRS
KGKRKKKEGSNDELTENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKRKDDDED
DNDDGCLKEPKSSGQLMAEWGLDDVEYLFSEADYHTLTNYKAFSQFLRPLIAKKNPKIPM
SKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPPLAVSPQQASQPVPIRK
AKTKEGKGPGVRKKIKASKDSKKKGKGRKVAGLKFRFGGISNKRKKGSSSEEDEREESDF
DSASIHSSSVRSEGSAALGKKSKRRRKKRRIDDGDGYETDHQDYCEVCQQGGEIILCDTC
PRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDEDDEEEGGCEEEEDDHMEFCRV
CKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPP
APFMVGLPGPDVEPGVPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRN
YQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHS
FDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDARLPKRLVK
KGKKPKEDKQKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTI
LADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTG
DKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWA
CLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLE
GFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKF
ILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKS
SGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA
IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK
VMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFK
DDVEGMMSQGQRPVTPIPDVQSSKGGALAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAI
SKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEK
LLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDED
FEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMP
PQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLT
RIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGRKPSEVTSSDPNTPVPASPAHLLPAP
LGLPDKMEAQLGYMDEKELGVQKPKKPPEIQALPTALDRVEGEDKHENSDGQERLEDAEK
APPSPEQPPKEELLPEKEKILDKLELSLIHSRGDGNDFRPDDTKVEEKEPIETQQNGDKE
EDEEGKKEDKNGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAG
IVTHGYARWQDIQNDPRYMILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLR
RAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEEL
LSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTTQQGAFGNSQMYNNNF
GPNFRGPGPGGIVNYNQMPLGPYVTDI
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcccgctgggcaccgaggaggagctgccgcggctgttcgcggacgagatggag
aacgaggacgagatgtcagaagaagaagatggtcttgggggcttcgatgactgcttccct
gaggagcctgtgggccttcccaagaagaagaaatccaagaagctcaaggagaacaggtcc
aaagggaaacggaagaagaaggaggggagcaatgacgagctgacggaaaatgaagaagat
ctggaagagaagtcggagagtgagggcagtgactactcccctaataagaagaagaaaaag
aaactcaaggacaagaaggagaaaaaagccaagcgaaagaggaaagatgatgacgaggat
gataacgatgacgggtgcctgaaggagcccaagtcctcggggcagctcatggccgagtgg
ggcctggacgatgtggagtacctgttctcagaggccgactaccacacactgaccaactac
aaggccttcagtcagttcctcaggccgctcattgccaagaagaacccgaagatccccatg
tccaaaatgatgaccgtcctgggtgccaagtggcgggaattcagcgccaacaaccctttc
aagggcagctcggcagcggctgccgcggcagcagtggccgcggccgtggagacagtcacc
atcgcccctccgctggctgtcagcccccagcaggcatcccagcctgtacctatccgcaag
gccaagaccaaggagggcaaggggccaggagtgaggaagaagatcaaagcctccaaggac
tcgaagaaaaagggcaaagggagaaaggtagccgggctcaagttccgctttggagggatc
agcaacaagaggaagaaaggctcctcgagcgaggaagatgagcgggaggagtcggacttc
gacagcgccagcatccacagctcctccgtgcgctccgagggctcggcagccctggggaag
aaaagcaagaggcggcgcaagaagaggaggattgacgatggtgatggctatgagacggac
caccaggactactgtgaggtgtgccagcagggcggggagatcatcctgtgcgacacctgc
ccgcgggcctaccacctagtctgcctcgacccagagctggagaaggctccggagggcaag
tggagctgtcctcactgtgaaaaggaggggatccagtgggagccgaaggacgacgaggac
gacgaggaggagggcggctgcgaggaggaggaggacgaccacatggagttctgccgcgtg
tgcaaagacggcggcgaactgctctgctgcgacgcctgcccgtcctcctaccacctgcat
tgcctcaacccgccgctgcccgagatcccaaacggtgaatggctctgcccgcgctgtact
tgtcccccactgaagggcaaagtccagcggatcctgcactggaggtggacggagcccccg
gctcccttcatggtggggctgccggggcccgacgtggagcccggtgtccccccaccgaag
cccctggagggcattccggagagggagttctttgtcaagtgggctggactctcctactgg
cactgctcctgggtgaaagagctacagctggagctgtaccacacggtgatgtatcgcaac
taccaaagaaagaacgacatggatgagccgccgccctttgactacggctctggcgacgag
gacggcaaaagcgagaagaggaagaacaaggaccctctctatgccaagatggaggagcgc
ttctaccgctacggcatcaagcccgagtggatgatgatccaccgtatcctgaaccacagc
ttcgacaaaaagggggacgtgcactacctgatcaagtggaaagacctgccctatgaccag
tgcacctgggagatcgacgacatcgacatcccctactacgacaacctgaagcaggcctac
tggggtcacagggagctgatgctgggtgaggatgccaggctgcccaagaggctggtcaag
aagggcaagaagccaaaggaggataaacagaagccgccagacacacccatcgtggatccc
acggtcaagtttgacaagcagccttggtacatcgactccacgggtggcacactgcacccg
taccagctggagggcctcaactggctgcgcttctcctgggcccagggcacagacaccatc
ctggccgacgagatgggcctgggcaagactgtgcagaccatcgtcttcctctactccctg
tacaaggaggggcactccaaggggccctacctggtcagcgcgcccctgtccaccatcatc
aactgggagcgggagtttgagatgtgggcgcccgacttctacgtggtcacctacacgggg
gacaaggagagccgctccgtgatccgggagaatgagttttctttcgaggacaacgccatt
cggagtggaaagaaggtgttccgcatgaagaaagaggtgcagatcaaattccacgtcctg
ctcacctcctacgagctcatcaccatcgaccaggccatcctgggctccatcgagtgggcc
tgccttgtggtggacgaggcccaccggctcaagaacaaccagtccaagttcttcagggtc
ttgaacagctacaagatcgattacaagctgctgctgacggggaccccacttcagaacaac
ctggaggagcttttccacctcctcaacttcctgactccagagaggttcaacaatctggag
ggcttcctggaggagtttgccgatatctccaaggaagaccagatcaaaaagctccatgac
ctgctggggccgcacatgctgaggcggctcaaggccgatgtgttcaagaacatgccggcc
aagaccgagctgatcgttcgcgtggagctgagccagatgcagaagaagtactacaagttc
atcctcacgcggaacttcgaggccctgaactccaaggggggcgggaaccaggtgtcgctg
ctcaacatcatgatggacctgaagaagtgttgcaaccacccctacctgttccccgtggct
gccgtggaggcccccgtcttgcccaatggctcctatgacggcagctccctggtcaagtcc
tcgggcaagctcatgctgctacagaagatgctcaagaaactgagggatgaagggcaccgc
gtgctcattttctcccagatgacgaagatgttggaccttctggaggacttcctggagtat
gagggctacaagtatgagcggattgatggtggcatcactgggggcctccgacaagaggcg
atcgacagattcaacgcccccggggcccagcagttctgcttcctcctctcgacccgggcg
ggtggcctgggcatcaacctggctacagcagacacggtcatcatctacgactcggactgg
aatccacacaatgacatccaggccttcagccgcgcccaccgcatcggacagaacaagaag
gtaatgatctaccgctttgtgactcgggcctcggtggaggagcgcatcacgcaggtggcc
aagcgcaagatgatgctcacccacctggtggtgcggcctggcctcggttccaagtctggc
tccatgaccaagcaggagctggacgacatcctcaagttcggcaccgaggagctcttcaag
gacgacgtggagggcatgatgtctcagggccagaggcctgtcacgcccatcccggatgtc
cagtcctctaaagggggagccctggctgccagcgccaagaaaaagcatggcagtaccccg
ccaggcgacaacaaggacgtggaggacagcagtgtgatccactatgacgatgcggccatc
tccaagctgctggacagaaaccaggacgccacggacgacacggagctgcagaatatgaac
gaatacctgagctccttcaaggtggcgcagtacgtggtgcgcgaggaggacggcgtggag
gaggtggagcgggagatcatcaagcaggaggagaacgtggaccccgactactgggagaag
ctgcttcggcaccactacgagcagcagcaggaggacctggcccgcaatctgggcaagggc
aagcgcatccgcaagcaggtcaactacaacgacgcctcccaggaggaccaggagtggcag
gacgagctctcggataaccagtctgaatattccatcggctccgaggacgaggacgaggac
tttgaggaaaggccagaagggcagagtggacggcgacaatccaggaggcagctgaaaagc
gacagggacaagcccctgccacctcttctcgcccgtgtgggtggcaatatcgaggtgctg
ggcttcaacgcccggcagcggaaggcctttctgaacgccatcatgcgctggggcatgccc
ccccaggacgccttcaactcccactggctggtgcgggaccttcgagggaagagcgagaag
gagtttagagcctatgtgtccctcttcatgcggcacctgtgtgagccgggggctgacggt
gcagagaccttcgcggacggcgtgccccgtgagggcctctcgaggcagcacgtgcttacc
cgcatcggggtcatgtcactagttaggaagaaggttcaggagtttgaacacgttaacggg
aaatacagcaccccggacttgatccccgaggggcccgagggcaggaagccaagcgaagtc
acctcctcagaccccaacacgccagtgcccgccagccctgctcacctcctgccggcccca
ctgggcctgccagacaaaatggaagcccagctgggctacatggatgagaaggagctgggg
gtgcagaagccaaagaagcccccagaaatccaggccctgccaactgccctggacagagtg
gagggcgaggacaagcatgagaactcagatggccaggagcgactggaggacgcagagaag
gccccgccgtccccagagcagccgccaaaagaagaactgcttcctgagaaggagaaaatt
ctggacaagctggagctaagcttgattcacagcagaggggatggcaacgatttcaggcca
gatgacaccaaagtggaggagaaggagcccattgaaacacagcaaaatggtgacaaagag
gaagatgaggaggggaagaaggaggacaagaatgggaagttcaaattcatgttcaacatt
gcagatgggggcttcacagagctgcacacattgtggcagaatgaggaacgtgctgctgtg
tcctcggggaaaatctacgacatctggcaccggcgtcatgactactggctgctggcgggc
atcgtgacgcacggctatgcccgctggcaggacatccagaatgacccgaggtacatgatc
ctcaacgagcccttcaagtctgagatccacaagggcaactatctggagatgaagaacaag
ttcctggcccgcaggttcaagctgctggagcaggccctggtcatcgaggagcagctccgg
agggccgcgtaccttaacatgacccaggaccccaaccacccagccatggccctcaacgcc
cgcctggccgaggtggagtgccttgctgagagccaccagcacctgtccaaggagtccctt
gccgggaacaagccagccaatgctgtcctgcacaaggtcctgaaccagctggaggagctg
ctgagtgatatgaaggcggacgtgacgcgcctgccctccatgctgtcgcgcatccccccc
gtggctgcccgtctccagatgtcagagcgcagcatcctgagccgcctgaccaaccgagct
ggtgaccccaccactcagcagggcgctttcggcaactcccagatgtacaacaacaacttt
gggcccaacttccggggccctggaccgggagggattgtcaactacaaccagatgcccctg
gggccctatgtgaccgatatctag
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integrated database retrieval system
