Leopardus geoffroyi (Geoffroy's cat): 123599561
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Entry
123599561 CDS
T10761
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04151
PI3K-Akt signaling pathway
lgf04510
Focal adhesion
lgf04512
ECM-receptor interaction
lgf04820
Cytoskeleton in muscle cells
lgf04926
Relaxin signaling pathway
lgf04933
AGE-RAGE signaling pathway in diabetic complications
lgf04974
Protein digestion and absorption
lgf05146
Amoebiasis
lgf05165
Human papillomavirus infection
lgf05200
Pathways in cancer
lgf05222
Small cell lung cancer
Brite
Exosome [BR:
lgf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123599561 (COL4A4)
Glycosaminoglycan binding proteins [BR:
lgf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123599561 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
123599561
NCBI-ProteinID:
XP_045337466
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Position
C1:complement(210363705..210495631)
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AA seq
1686 aa
AA seq
DB search
MASIRCSFRWIKPLATDPWLLILILFSVQHVYASGKKFIGPCGGRDCSVCQCFPEKGSRG
QPGLPGPQGPIGPLGLPGPIGIPGEKGMRGDSGPPGAAGDKGDKGPTGVPGFPGLDGIPG
HPGPPGSRGKPGMHGYNGSRGDPGLPGERGVPGPRGPPGLPGENGEKGNSVFILGAIKGI
PGDRGDPGPPGLPGSRGARGPAGPMGHPGEPGLPGAPGHPGRPGLKGNPGVGVKGQMGEP
GEVGQQGSPGPTLLVQPPDFCLYKGEKGIKGMPGVTGPPGPPGPKGKPGFGAKGEKGVPG
FSGPRGDPGSYGLPGFPGLKGEPGLFGDPGSFGFLGPKGDPGDRGYPGPPGVLVTPSLPL
KGPPGDPGRPGRYGETGSVGPPGPPGPSGPPGETCAGMMGPPGPGGFPGHPGFPGAAGIP
GRADSTPGKPGSPGPPGLPGAPGLQGPPGSDVIYCSVGHPGPQGIKGKAGPPGRRGSKGE
KGNAGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGEKGHPGPPGAEGSPGPPGKPG
AAGPLGSKGEKGDMVVSKVKGQKGERGPDGLPGFPGQQGQHGRDGLPGERGDPGPPGDHE
DAAPGAKGFPGLPGPPGRTGPKGQPGLGFPGPPGERGPPGAPGRPGERGLEGLKGQKGDT
ISCNVTYPGRPGPPGFDGAPGPKGLPGPPGAPGLRCLDGPKGQRGKPGISEIPGPPGFRG
DVGDPGFGGAKGSSLPGPPGSPGSRGANGQKGIMGDTAYGHPGPPGERGLAGVPGSKGHR
GDPGPPGFAGPAGLPGFPGLKGPRGREGSAGFPGIPGPPGHSCERGAPGTPGQPGLPGAP
GSPGAPGWKGQRGDVGPPGPAGMKGLPGVPGRPGVDGPPGPPGLPGPIGDDGLPGLPGPK
GSQGLPGFPGFPGERGKPGLEGHPGHKGEPGERGRPGFLGDKGVKGAKGARGPPGDEGEM
AVISLKGKTGEPGPPGDSGFPGAEGDKGNPGMQGRRGEPGRYGPPGFHRGEPGRTGHPGL
PGAPGPPGSPGLRGIIGFPGFPGDQGEPGSPGSPGISGSDGLRGPKGNKGDPASQFGPPG
PEGEPGSPGCPGHLGAPGERGLPGVQGPRGPPGRPGLPGSAGPPGCPGDPGVPGLKGHPG
DMGDPGPRGMMGDPGTPGLPGIKGPPGSPGLNGLHGLKGQKGAKGASGSHEVGPPGPMGI
PGPKGETGDPGSPGISPPGLPGEKGPPGPPGRPGSPGPAGATGRAPEGDIPDPGPPGDQG
PPGPDGPRGAPGPPGPPGSVDLLKGEPGDRGLPGPPGPPGPPGPPGRKGFPGCDGKDGQK
GPVGFPGLQGPPGLPGSPGEKGLPGFPGRQGPPGPPGARGEPGPPADVDSCPRIPGLPGV
PGPRGPEGGMGPPGMRGPPGAGCKGESGPDGRRGEDGLPGSPGPPGSKGDTGEAGCPGAP
GPPGPIGDPGPKGFGPGYLSGFLLVLHSQTDGEPTCPAGMPRLWTGYSLLYLEGQEKAHN
QDLGLPGSCLPMFSTLPFAYCNIHQVCHYARRNDRSYWLASAAPLPMMPLSEEEIRPYIS
RCAVCEAPAQVVALHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLE
DFRAAPFLECQGRQGTCHFFANEYSFWLTTVRPDLQFSSVPSPDTFKESQAQRQRISRCQ
VCMKYS
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaataaggtgctcattcaggtggatcaagccattagccacagatccctggttg
cttatacttatcctgttttctgtacaacacgtatatgcgagtggaaagaagtttattggg
ccttgcggaggaagagattgctcagtttgccagtgctttcctgaaaaagggtctcggggt
caaccaggactcccagggccacagggtcctattggacccctgggactgccaggacccatt
ggaattccaggagagaaagggatgagaggtgacagcggccctcctggagcagccggtgac
aaaggtgataagggtccaactggtgttcctggatttccaggtttggatggcatacctggg
cacccggggcctcctggatccagaggcaagcctggcatgcatgggtacaatggctcgaga
ggtgatccagggcttccaggagaaagaggagttcctggcccaagaggccccccaggcctt
cctggggaaaatggagaaaaaggaaattctgtgttcattttaggtgccattaaaggaatt
ccgggtgacagaggggacccaggacctcctggcttgccgggatctaggggtgcaagaggt
ccagcgggcccaatgggacatccaggagagcctgggttaccaggtgctccaggccatcct
gggagaccaggcttgaagggtaatcctggcgtgggagtgaaggggcaaatgggagaaccg
ggtgaagttggccagcaaggttctcccggacccaccttattggtacagccacctgatttt
tgtctgtataaaggagaaaagggcataaaaggaatgcctggtgtaactggacctccagga
ccaccaggacccaagggaaaacctggatttggggccaaaggagagaagggtgttcctggg
ttctcaggaccgcggggtgatcctggttcctatggattgccaggctttccaggattaaag
ggggaaccaggactgtttggagatcctggatcatttggatttcttggcccaaagggggac
cctggagatcgcgggtacccaggaccaccgggtgttttggtaactccatctcttccgctc
aaaggtcctccaggggatccggggcgccctggccgctatggagaaacggggtctgttgga
ccgcctggtccccctggtccctcaggaccaccaggggaaacctgtgcaggcatgatggga
ccccctgggccaggagggtttcctggtcatccgggatttccaggggcagctggtatcccc
gggagagctgattccactccagggaaaccagggagcccgggaccacctgggttgcctgga
gctccaggactgcagggccctccaggatcagatgttatatattgtagtgttgggcaccct
ggaccacaaggaataaaaggcaaagcaggtcctccaggaagaagaggctcgaaaggagaa
aaaggaaacgcggggctctgtgcctgtgagcctggtcccatgggcccaccaggccctccg
ggacttcctgggaggcagggtagtaagggagacttggggctccctgggtggcttggagag
aaaggtcatccaggccctccgggtgctgaaggatctccaggaccaccaggaaaacccggt
gctgcaggaccacttggcagtaaaggagaaaagggagacatggttgtgtcaaaagtgaaa
gggcagaaaggagaaaggggtcctgatgggctcccaggatttccaggacaacagggacaa
catggccgggatggacttcctggagaaaggggggatccgggacccccgggggatcatgaa
gacgcagccccaggtgcaaaagggtttcctggattgccagggcccccaggaagaacagga
cctaagggacaaccaggactaggatttcccgggccaccaggagaaagagggccaccagga
gctccaggccgtcctggcgagaggggccttgagggcctgaagggtcagaaaggcgataca
atttcttgtaacgtaacctaccctgggaggccaggacctccaggttttgatggagctcca
ggaccaaagggacttccgggccctccgggcgctccagggttgaggtgtttagatgggcca
aagggtcagcgtggcaaaccaggaatatcagaaatacctggtccacctggttttcgtggt
gacgtaggagatccaggttttggaggtgcaaaggggtcctcccttcctgggcccccaggc
tctcccggttctcgtggagcaaatgggcagaaaggaatcatgggagacactgcctacggc
cacccaggtcccccgggagagagaggtcttgcaggggtgccggggtcaaaaggacacaga
ggtgatccaggacctccaggctttgcagggccggctggtttgcccggattcccaggtctc
aaaggccccagaggcagagagggaagtgctgggtttccagggatcccaggtccacctggc
cattcctgtgaaagaggcgccccaggaacaccagggcaacccggactccccggggctccg
ggcagtccaggtgccccaggttggaaaggacagcgaggggatgtggggcctcctggtccg
gctggcatgaagggtctccctggagtcccaggacggccaggggtagatggaccccccgga
cccccagggctcccaggccccataggcgatgatggactgcctggtcttccaggcccaaag
ggatcccaggggctgcccggcttcccaggtttcccaggggagagaggaaagcctggcctg
gagggacaccctggccataaaggggaaccaggagagaggggtcggcctggcttcctcgga
gataagggggtgaaaggcgccaaaggagcaaggggacccccaggagatgaaggagagatg
gctgtaatttccctaaaggggaaaaccggggaacctggacctcctggagatagtggattc
ccaggagcagaaggtgataaaggcaatccggggatgcaggggaggagaggagagccggga
agatacggaccacctggatttcacagaggggagcctggtagaaccgggcacccggggctc
cctggagccccaggccctccaggctcacccgggctgagaggcattattggttttccagga
tttccaggtgaccagggtgaaccaggttctccagggtcccctggaatttcaggaagcgat
ggactgagaggccctaaaggaaacaaaggggaccctgctagtcagtttggcccacctggt
cccgagggagaaccaggtagccctggatgtccaggacatcttggagcacctggagagcgg
ggcttgccgggtgttcaagggcccagaggaccacctggaaggccaggactacctggctcc
gccggaccaccaggctgtccaggtgatccaggagtacctgggctgaagggacatccagga
gacatgggggatcctgggccaagaggcatgatgggggacccggggacaccaggtcttccg
ggaataaaaggtccccccgggtcgcctggtctgaacggcttacatggtttaaagggtcag
aaaggagccaaaggcgcttcaggttcgcatgaagtgggcccacctggcccaatgggcata
cctgggccgaaaggggagacaggagaccccgggagcccaggaatttctcccccaggcctt
cctggagaaaaaggtccccccgggcccccagggagacctggatcacctggtcccgcaggt
gccacaggaagagctcctgaaggtgacattcctgacccaggtccccccggcgatcaggga
cctcccggccccgatggtccaagaggagcacccgggcccccgggcccccctgggagtgtt
gaccttctgaaaggggaaccaggagaccggggtctgccaggtcccccgggccccccaggc
cccccaggccccccaggacgcaaaggcttcccgggatgtgatggaaaagatggccagaaa
ggaccagttggattcccgggactgcaggggccacctggacttccgggatctcctggggag
aagggcttacctggctttccaggcagacaagggccccctgggcctccaggtgccagaggt
gaaccggggccacctgcagacgtggattcctgcccccgaatccccgggcttcctggggtg
ccaggcccaagaggaccagaaggaggcatgggcccccccggaatgagaggccccccagga
gcagggtgcaaaggagagtcggggccggatggcaggaggggcgaggatggcctcccaggg
tctcctgggcctcctggaagcaaaggggacacgggagaagcgggctgtcccggagcacca
ggccctcctgggcccattggggatcccgggcccaaagggtttgggcctggatacctcagt
ggcttcctcctggttctccacagtcagacagatggagaacccacctgcccagcgggcatg
cccaggctgtggacgggctacagtctgttgtacctggaaggacaggagaaggctcacaac
caagacctgggtctgccggggtcttgccttcccatgtttagcacactgccctttgcctac
tgtaacatccaccaagtctgccactacgcccggagaaacgaccgatcgtactggctggcc
agcgccgcgcccctgcccatgatgccgctctcggaagaagagatccgcccgtacatcagc
cgctgtgccgtgtgtgaggccccggctcaggtggtggctctgcacagccaggaccagtcc
atccccccgtgtccacggacctggaggagcctctggatcgggtactcgttcctgatgcac
acaggggccggggaccaaggaggagggcaggccctcatgtccccgggcagctgcctggaa
gattttcgagcagcgccgttcctcgagtgccaaggccgccagggaacttgccactttttt
gcaaacgagtatagcttctggctgacaacagtgaggcctgacctgcagttttcctcggtg
ccatcaccagacaccttcaaagaaagccaggcccagcggcagagaatcagcagatgccag
gtctgcatgaaatacagctag
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