Leopardus geoffroyi (Geoffroy's cat): 123599562
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Entry
123599562 CDS
T10761
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04151
PI3K-Akt signaling pathway
lgf04382
Cornified envelope formation
lgf04510
Focal adhesion
lgf04512
ECM-receptor interaction
lgf04518
Integrin signaling
lgf04820
Cytoskeleton in muscle cells
lgf04926
Relaxin signaling pathway
lgf04933
AGE-RAGE signaling pathway in diabetic complications
lgf04974
Protein digestion and absorption
lgf05146
Amoebiasis
lgf05165
Human papillomavirus infection
lgf05200
Pathways in cancer
lgf05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
123599562 (COL4A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123599562 (COL4A3)
04518 Integrin signaling
123599562 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123599562 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
123599562 (COL4A3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
123599562 (COL4A3)
09154 Digestive system
04974 Protein digestion and absorption
123599562 (COL4A3)
09158 Development and regeneration
04382 Cornified envelope formation
123599562 (COL4A3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
123599562 (COL4A3)
09162 Cancer: specific types
05222 Small cell lung cancer
123599562 (COL4A3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
123599562 (COL4A3)
09174 Infectious disease: parasitic
05146 Amoebiasis
123599562 (COL4A3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
123599562 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lgf04147
]
123599562 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
lgf00536
]
123599562 (COL4A3)
Exosome [BR:
lgf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123599562 (COL4A3)
Glycosaminoglycan binding proteins [BR:
lgf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123599562 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
123599562
NCBI-ProteinID:
XP_045337476
LinkDB
All DBs
Position
C1:210495681..210630025
Genome browser
AA seq
1671 aa
AA seq
DB search
MRPGTARRPPALLLQLLLVLLAAAPTTGKGCVCKDKGQCFCDGIKGEKGEKGFPGPAGSP
GQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGGRGITGLPGFSGPPGLPGTPGHPGPYGPA
GVPGCNGSKGEQGFPGLPGIPGYPGIPGAVGLKGEKGAPAAEGIELDGRGDPGLPGAPGL
QGLPGLPGFPGPVGPPGPPGLFGFPGTMGPPGPKGHMGDNVIGQKGERGVKGLTGPPGPP
GTVIVTLTGPDNRTQDLKGEKGDKGAMGKSGPPGPSGPPGESYGAEKGAPGEPGPQGKPG
KDGTPGFPGTEGAKGNRGFPGLPGEDGIKGWKGDIGPPGFRGPTEYYDAYQEKGDVGIPG
PPGPKGARGPQGPSGPPGVPGSVGSSRPGLRGAPGFPGVKGRKGERGPPGKNAVGPPGSP
GCPGAPGPTGSPGYPGPPGDIIFRKGPPGDSGLPGPIGFPGIPGVDGPKGEPGLLCIQCP
CVPGPPGLPGLPGLDGMKGIPGGQGPAGTKGSPGSPGSAGLPGYPGFPGAQGDPGLKGEK
GEAPQPDGQVGAPGDPGLRGHPGRRGLDGIPGTPGVKGSPGPKGEPALTGEKGDQGPPGD
PGTPGPPGPAGPPGPPDYGPQGEPGPKGTQGIPGAPGPPGEAGPKGEFSVSTPVPGPPGP
PGLPGRAGPQGPPGLPGSIGKCRYPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGAKGST
GYPGEMGKPGSPGEPGLPGAKGEPGLALPGEPGTPGFPGERGNSGENGEIGLPGHPGLPG
IPGTRGLDGPQGDPGKAGPPGEKGPPGRCMEGPRGAQGLPGLNGLEGQQGRRGETGPKGD
PGIPGLDRSGFPGEPGPPGMPGHRGEVGPPGQKGYPGNPGFLGPPGEKGTIGMMGYPGHI
GPPGPPGKPGTPGQRGDFGIPGSKGEKGPPGAQGEEGDKGPLGPPGISHLLGDKGEPGLK
GFAGKPGEKGNSGVPGLPGLKGLQGPPGPPGPPGPRGDPGNIGNPGAPGPRGVPGSMGII
GVPGPKGHRGALGLPGLTGRPGLPGVHGLQGEKGEPGYSAGARPGSPGPKGDPGFPGDMG
RKGERGVPGAPGHSGPAGPEGAPGNPGSPGHPGKPGPDGDLGLKGIKGFPGPPGVKGPPG
PPGFPGPPGPMGMRGNQGRDGIPGPAGEKGETGLLKAVPGPRGSPGVAGAKGDRGAPGLP
GLPGRKGIVGDAGPWGPTGMTGLPGPPGFPGAVIPGQKGNRGPPGFRGNPGDPGPPGPPG
SHVRGLKGDKGLLGKPGPRGPPGTVGDEGPPGQPGAPGAPGLPGLRGDPGFHGFPGVKGE
KGNPGFLGPVGPPGQIGPKGPPGILGDPGTVKIISLPGSPGPPGPVGEPGMQGEPGPPGP
PGILGPCGPRGKPGKDGRPGTPGPIGEKGNKGCKGEQGPPGLDGLPGLKGKPGDIGPPTT
ATAMRGFIFTRHSQTTAIPSCPEGTQPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTT
MPFLFCNINDVCNFASRNDYSYWLSTPALMPMDMAPITGRALEPYISRCTVCEGPAMAIA
IHSQTTDIPSCPHGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFIECHGR
GTCNYYSNSYSFWLASLNPKRMFRKPIPSTMKAGELEKIISRCRVCMKRRQ
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccgggacggctcggaggccgcccgcgctgctgctgcagctcctgctggtgctc
ctggcggcggcgcccacgacaggcaagggctgtgtctgtaaagacaaaggccagtgcttc
tgtgatgggatcaaaggagagaagggggagaaaggctttcctggacccgctggttctcct
ggccagaaggggttcccaggtcccgaaggcttgcctggaccacagggacccaagggctca
ccaggacttccaggactcaccggtcccaaaggtggaaggggaataactggattgccagga
ttctcaggtcctcctggacttccaggcaccccgggccatcctggaccatatggacctgct
ggtgtaccagggtgcaatggttctaagggtgagcaagggtttccaggccttccggggata
ccaggctacccagggatcccgggtgctgttggcttgaaaggagaaaagggagctcccgct
gcagaaggtatagaacttgatggaagaggtgaccccgggttgccaggagccccaggatta
cagggcttaccaggccttccaggttttcctggacccgttggtccacctggccctccaggg
ctctttggctttccaggaaccatgggacctccgggacctaagggtcacatgggcgataat
gtgataggacaaaaaggagagcggggtgtgaaaggattgacaggaccccctggaccacca
ggaacggttattgtgacgctaaccggcccagataacagaacgcaggacctcaagggagag
aaaggggacaagggagccatgggcaaatccggacctcctggaccctcaggaccgcctggg
gaatcttatggagctgaaaaaggtgctcctggagaacctggcccgcagggaaaacctgga
aaagatggaacccctggtttccctggcactgagggagccaaaggcaacaggggcttccct
gggttaccaggtgaagacggcattaaggggtggaaaggggacattggccctccaggattc
cgtggtccaacagaatattatgatgcataccaggaaaagggggatgtaggaattccaggc
ccaccaggccccaaaggagctcgtggcccacagggtcccagtggtcctcctggagttcct
ggaagtgttgggtcgtcgaggcctggcctcagaggagcccctggattcccaggcgtgaaa
ggaaggaaaggggaacgaggacccccgggaaagaatgcagtggggcctcctgggtcccca
ggttgtcctggggcaccaggccccacagggtcgccgggatacccaggaccaccaggtgac
atcatttttcgcaaaggtccacctggagatagtggacttccaggccctatagggtttcca
ggaatcccaggagttgatgggcccaaaggggaaccaggcctcctgtgcatccagtgtcct
tgtgtcccagggcctccgggcctcccaggattgccggggttagacggcatgaaaggaatc
ccaggcggacaagggccagctggcactaaaggaagcccagggtccccaggaagtgcgggt
cttcccggatatccagggttcccgggtgctcagggggatccaggacttaaaggagaaaaa
ggggaagcacctcaacctgatggacaagtgggtgcccccggggaccctgggctcagaggg
catcctggaagaagaggcttggatggaattcctggaacccccggggtaaaaggatcacca
ggacctaaaggggaaccggccctgactggtgagaagggggaccagggtcctccaggggat
cccggcacccctgggcccccgggaccggcaggaccacctggaccaccagactatggaccg
cagggagagcctggtccaaagggtacccaaggaattcctggagcccccggaccgcctgga
gaagccggtcctaagggagaattcagtgtttcgacaccagtcccagggcccccaggacct
ccagggctccctggccgtgctggcccccaaggtccgcctggtctccctggatccatagga
aaatgtcgttatccgggtcttcctgggcctgatggtgaaccagggattccaggaattggc
ttccctgggcccccaggacctaagggagaccaaggttttccaggagcaaaaggatcaaca
ggttatccaggagaaatgggaaagcctgggtcacctggagaaccaggtctccccggagcc
aagggagagccgggactagccttgcctggagaaccaggaacgccaggttttccgggagaa
agaggcaattctggggaaaatggagaaattggactccctggacatccaggtctccctgga
attccaggaaccagagggcttgatggaccacaaggggatccagggaaggctggaccacct
ggagaaaaaggacccccaggaaggtgcatggagggtcccaggggagcccaaggacttcca
ggattaaatggattggaaggtcaacaaggcagaagaggtgaaacggggccaaagggagac
ccaggtattccaggcttggataggtcaggctttcctggagaacccggaccaccagggatg
ccaggtcatcgaggtgaggtgggaccacctggtcaaaaaggatatccaggaaatccagga
tttttaggaccaccaggtgaaaaagggacgattggcatgatgggctatccgggacacatt
ggtcctccagggcctcccggaaagccaggaaccccaggacagaggggtgactttggaatc
ccaggatcaaagggtgagaaagggcccccaggagcccagggtgaagaaggagacaaagga
cccctggggcctcctggaatatcccacttactgggggacaaaggagaaccaggcctcaaa
ggatttgcagggaagccgggtgagaaaggaaacagtggtgttccagggttaccgggttta
aaaggactccaagggccacctggaccaccaggaccaccaggccccagaggagatccaggc
aacattgggaatcccggggcaccaggaccacgtggcgtgccaggaagcatggggatcatc
ggggtgccaggtcctaaaggacacaggggagctttgggactaccaggcttaactggaagg
ccaggcctcccaggtgttcacggtctccaaggagagaagggagagccgggttattcagca
ggtgcaaggccaggatcaccgggaccaaagggagatccaggatttccaggtgacatggga
aggaaaggagaaagaggggtacctggagcacccggacattcggggcctgctggacctgag
ggagcgcctggaaaccccggaagtcctggtcacccaggaaagccgggccctgatggtgat
ttggggttaaaaggcattaaaggcttccccggtcctccaggagtaaaaggccctccagga
cctccaggatttccaggacctcccggaccaatggggatgagaggcaaccagggacgtgat
ggaatccctggcccagcaggagaaaagggagaaacaggtttgctgaaagcagttccaggc
cccagagggagccctggagttgcaggagccaaaggagacaggggagccccaggcttaccc
ggcctccccggcaggaaagggatagtgggagatgccgggccgtggggacccaccggcatg
acgggactcccaggaccaccgggttttcctggcgcagtcatccctggccagaaaggaaat
cgaggtccaccaggcttcagaggaaacccaggtgaccctggtcctccgggacctccaggg
agtcacgtgagaggcttgaaaggagacaaggggcttctgggcaagcctggccctagaggt
ccacctggaactgtaggagacgaggggccaccgggtcagccgggagcaccaggtgcccca
ggtctgccagggctcagaggtgatccgggattccatggatttccaggtgtaaaaggggag
aagggtaatccaggatttctgggaccagtcggacctccagggcaaattgggccaaaagga
ccacccggtatacttggagaccctggcacagttaagatcatctccctcccgggaagccca
gggccacctggacctgttggagaaccagggatgcaaggagagcctgggccaccggggcca
ccaggaatcctaggaccctgtgggccaagaggtaaaccaggcaaggatggaaggccggga
actcctgggccaattggagaaaaaggcaacaaaggctgtaaaggagagcaaggaccccct
ggtttggatggactgccaggcttgaagggcaaacctggagacattggaccacccacaact
gcaacagccatgagaggcttcatcttcaccaggcacagtcagaccacagccatcccttcc
tgcccagaaggcacacagccgctctatagtgggttctctcttctttttgtacaaggaaat
gaacaagcccacggacaagacctgggaacccttggcagctgcctgcagcgatttaccaca
atgccattcttgttctgtaacatcaatgacgtatgcaattttgcatctcgaaatgattat
tcatactggctgtcaacacccgctctgatgccaatggacatggctccaattactggcagg
gccctggagccttatattagcagatgcaccgtctgtgaaggtcctgcgatggccatagct
atccacagccaaaccactgacattccctcctgtcctcacggctggatttctctctggaaa
ggattctcttttatcatgttcacaagtgcaggttctgagggcgcaggtcaggctctggca
tcccccgggtcctgtctggaagaattccgagccagtccatttatagaatgtcatggaaga
ggaacgtgcaactactattcaaattcctacagtttctggttggcttcattaaaccccaaa
agaatgttcagaaaacctattccatcaactatgaaagctggggagttagaaaagataata
agtcgctgtcgggtgtgcatgaagagaagacaatga
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integrated database retrieval system
