Leopardus geoffroyi (Geoffroy's cat): 123601842
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Entry
123601842 CDS
T10761
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03008
Ribosome biogenesis in eukaryotes
lgf03013
Nucleocytoplasmic transport
lgf03015
mRNA surveillance pathway
lgf05014
Amyotrophic lateral sclerosis
lgf05164
Influenza A
lgf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123601842 (NXF1)
03015 mRNA surveillance pathway
123601842 (NXF1)
03008 Ribosome biogenesis in eukaryotes
123601842 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
123601842 (NXF1)
05168 Herpes simplex virus 1 infection
123601842 (NXF1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
123601842 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123601842 (NXF1)
03009 Ribosome biogenesis [BR:
lgf03009
]
123601842 (NXF1)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123601842 (NXF1)
mRNA cycle factors
Stress granule specific factors
123601842 (NXF1)
Ribosome biogenesis [BR:
lgf03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
123601842 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
123601842
NCBI-ProteinID:
XP_045341580
LinkDB
All DBs
Position
D1:complement(106635930..106647664)
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AA seq
618 aa
AA seq
DB search
MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDRDVAM
SDAQEVPRVRYNPYAARPNRRGDSWHDRDRIHVTVRRDRALPERGGAGTSQDGTSKNWFK
ITIPYGRKYDKSWLLSVIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILD
QENRRISIIINSSVPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ
NIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSLVQKAPNLKILNLSGN
ELKSERELDKVKGLKLEELWLDGNPLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIA
FDVEAPTTLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIP
FTPQNPSRSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVV
DISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPASNSGLCIVNDELFVRNASP
DEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQ
AFTHLKAKGEIPEVAFMK
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggggaagtcctacaacgagcacgatgaccgtgttagtttccctcaaaga
agaaagaagggccggggtcccttccggtggaaatatggtgaggggaaccgtaggtctgga
agaggaggctctggcattcggtcttcccgcctggaggaagatgacagagatgtagcgatg
agtgatgcccaggaggttccccgagtacgatacaacccctatgctgcccgacccaaccgt
cgaggtgacagttggcatgatcgagaccgcattcatgttaccgtgcggagagacagagct
cttccagagagaggaggggctggcaccagccaggacgggacctcgaagaactggtttaag
attacaattccttatggcagaaaatatgacaagtcatggctcctgagtgtgattcaaagc
aagtgcagtgtccctttcacccccattgagtttcactatgaaaacacacgggcccagttt
tttgttgaggatgccagtaccgcctctgcgttgaaggccgtcaactataagattttggat
caggagaaccgaaggatctctatcatcatcaattcttctgtcccgccccattctgtacag
aacgagctgaagccggaacaggtggagcagctaaagctgatcatgagcaaacgatacgat
ggctcccagcaagcgcttgacctgaagggcctccgttcagacccagacttggtggcccag
aacattgatgttgtcctgaatcgcaggagctgcatggcggccaccctacggatcatcgag
gagaacatccccgagctgttgtccttgaacttgagcaacaacaggctgtacaggctggat
gacatgtccagcctggtgcagaaagcacccaacctgaagatcctcaacctctccggaaat
gagttgaagtccgagagggagttggacaaggtaaaagggctgaagctggaagaattgtgg
ctcgacggaaacccgctgtgtgacaccttccgagaccagtccacctacatcagcgccatt
cgcgaacgatttcccaaattattacgcctggatggccatgagttaccccctccgattgcc
tttgacgttgaagcccccacgacgttaccgccctgcaagggaagctattttggaacagag
accctgaagaacctggtcctgcatttcttgcagcagtactatgcggtgtatgactctgga
gaccggcagcggctcctggacgcctaccatgacggggcctgctgctccctcagcatccct
tttaccccccagaacccttcccgaagcaacctggccgagtacttcaaggacagcaggaat
gtgaagaagctcaaagaccccaccctgcggttccgcctgctgaagcacacgcgtctcaac
gttgttgccttcctcaatgagttgcccaaaactcagcacgatgtcaactcctttgtggta
gacataagcgcccagacaagcacattgctgtgtttttctgtcaatggggtcttcaaggaa
gtggatggaaaatctcgggattctttgcgagccttcaccaggacatttgtcgctgttcct
gccagcaattcagggctgtgcatcgtaaatgacgagctgtttgtgcgcaatgccagccct
gatgagatccagagagccttcgccatgcctgcacccacaccttcctccagcccagtgccc
accctctccccagagcagcaggagatgctgcaggcattctctacccagtctggcatgaac
cttgagtggtcccagaagtgcctccaggacaacaactgggactacaccagatctgcccag
gcctttactcatctgaaggccaagggcgagatcccagaagtggcgttcatgaagtga
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