Leopardus geoffroyi (Geoffroy's cat): 123605285
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Entry
123605285 CDS
T10761
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03082
ATP-dependent chromatin remodeling
lgf04714
Thermogenesis
lgf05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123605285 (SMARCA4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
123605285 (SMARCA4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
123605285 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgf03021
]
123605285 (SMARCA4)
03036 Chromosome and associated proteins [BR:
lgf03036
]
123605285 (SMARCA4)
Transcription machinery [BR:
lgf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123605285 (SMARCA4)
Chromosome and associated proteins [BR:
lgf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
123605285 (SMARCA4)
Chromatin remodeling factors
BAF complex
123605285 (SMARCA4)
PBAF complex
123605285 (SMARCA4)
GBAF(ncBAF) complex
123605285 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Htt_C-HEAT
Motif
Other DBs
NCBI-GeneID:
123605285
NCBI-ProteinID:
XP_045347853
LinkDB
All DBs
Position
A2:8312255..8407046
Genome browser
AA seq
1650 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGAHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
DSLTEKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDGDAGSSTPTTSTRSRDKDDDS
KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY
YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF
TSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS
RGSRAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagacccaccgctgggcggaactcctcggccaggcccttccccgggcccg
ggcccctcccctggagccatgttgggccctagcccaggcccctcgccgggctctgcccac
agcatgatggggcccagtccggggcctccctcagcaggacaccccatcccgacccagggg
cctggagggtaccctcaggacaacatgcatcagatgcacaagccaatggagtccatgcac
gagaagggcatgtcggatgatccccgctacaaccagatgaagggaatggggatgcggtcg
ggggcccatgcagggatggggcccccgccaagccccatggaccagcactcccaaggttac
ccctcccctctgggtggctccgagcacgcctccagtccggttccagccagcggcccatcc
tcaggcccacagatgtcgtctgggccaggaggggccccgctggatggcgccgatccccag
gctttgggacagcagaaccggggcccgactccgtttaaccagaaccagctgcatcagctc
agagcccagatcatggcctacaagatgctggccaggggccagcccctccccgaccacctg
cagatggcggtgcaggggaagcggccgatgcctgggatgcagcagcagatgccaacgcta
cctccaccctctgtgtccgcaacgggccccggccccggccccggccccggccccgggcca
ggtccaggaccagcacctccaaattacagccggcctcacggtatgggagggcccaacatg
ccccccccaggaccctcaggtgtgccccctgggatgccaggtcagccccccggagggcct
cccaagccttggcctgaaggacccatggcgaatgctgctgcccccacgagcacacctcag
aagctgatccccccacagcccacgggccgcccctcaccagcgccccctgccgtcccgcct
gccgcctccccggtgatgccaccccagacacagtcgccggggcagcctgcccagcctgcc
cccatggtgcccttgcaccagaagcagagccgcatcacccccatccagaagccgcggggc
ctggaccctgtggagatcctgcaggagcgggagtacaggctgcaggctcgaatcgcacac
cgaattcaggaacttgaaaaccttcccgggtccctggccggggatttgcgaaccaaagcg
accattgagctcaaggccctcaggctgctgaacttccagaggcagctgcgacaggaggtg
gtggtgtgcatgaggagggacaccgccctcgagacggccctcaatgccaaggcctacaag
cgcagcaagcggcagtccctgcgcgaggcccgcatcaccgagaagctggagaagcagcag
aagatcgagcaggagcgcaagcgccggcagaagcaccaggaatacctcaacagcattctg
cagcatgccaaggatttcaaagaatatcacagatcggtcacaggcaaaatccagaaactc
acgaaggctgtggccacgtaccacgccaacacggagagggaacagaagaaggaaaacgaa
aggattgagaaagagagaatgcggaggctcatggctgaagatgaggagggctaccgcaag
ctcatcgaccagaaaaaggacaaacgcctggcctacctcttgcagcagacggacgagtac
gtggcgaacctcacagagctggtgcggcagcacaaggctgcccaggtcgccaaggagaaa
aagaagaaaaagaaaaagaagaaggcagaaaacgcagaaggacagacgcctgcaatcgga
cctgatggcgagcctctggatgagaccagccaaatgagtgacctcccggtaaaagttatc
catgtcgagagcgggaagatcctcacgggcacagatgcccccaaagcagggcagctagag
gcctggcttgagatgaaccccgggtatgaagtagctccaagatctgatagtgaagaaagt
ggctcagaagaagaggaggaggaggaggaagaggaacagccgcagccagcacagcctccc
accctgcctgttgaggagaagaagaagattccagatccagacagcgatgacgtctcggag
gtagacgcccggcacatcattgagaatgccaagcaagatgttgatgacgagtacggtgtg
tcccaggccctggcacggggcctgcagtcctattacgccgtggcccatgctgtcaccgag
agagtggataagcagtcggcgctcatggtcaatggtgtccttaaacagtaccagatcaaa
ggcctggagtggctggtgtctctgtacaacaacaatctgaacggcatcctggctgacgag
atgggcctggggaagaccatccagaccatcgccctcatcacgtacctcatggagcacaag
cggatcaatgggccctttctcatcatagtacctctctccacattgtcaaactgggcatac
gaatttgacaagtgggccccctccgtggtgaaggtgtcctacaagggttctccagcagcc
aggcgtgctttcgtcccccagctccgaagtggcaagttcaacgtcttgctgacgacttac
gagtacatcattaaagacaagcacatccttgcaaagatccgttggaagtacatgatcgtc
gatgaaggccaccgcatgaagaaccaccactgcaagctgacgcaggtcctcaacacgcac
tacgtggccccccgccgcctgctgctgacgggcacgccgctgcagaacaagctgcccgag
ctctgggcgctcctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgag
cagtggttcaacgcgccctttgccatgactggggaaaaggtggacctgaacgaggaggaa
accattctcatcatccgtcgtctccacaaagtgctgcggcccttcctgctccggcggctc
aagaaggaagtcgaggcccagttgcctgaaaaggtggaatatgtcatcaagtgtgacatg
tctgcgctccagcgtgtgctctaccggcacatgcaggccaaaggggtgctgctcaccgat
ggctccgagaaggacaagaagggcaaaggtggcaccaagaccctgatgaacaccatcatg
cagctcaggaagatctgcaaccacccgtacatgttccagcacatcgaggagtccttctcc
gagcacttggggtttaccggtggcatcgtgcaagggctggacctgtaccgcgcctcgggg
aagtttgagcttcttgataggattcttcccaaactccgtgccaccaaccacaaagtgctg
ctgttctgtcagatgacctccctcatgacgatcatggaagattattttgcatatcgcggc
tttaaatacctcaggctcgacggaacgacgaaagcggaggaccggggcatgctgctgaaa
accttcaacgagccgggctccgagtacttcatcttcctgctcagcacgcgggccgggggg
ctcgggctgaacctccagtcagctgacactgtgatcattttcgacagtgactggaaccct
caccaggacctgcaagcccaagaccgcgcccaccgcatcgggcagcagaacgaggtgcga
gtgctccgtctctgcacggtcaacagcgtggaggagaagattctggccgcagccaaatac
aagctcaatgtcgaccagaaggtgatccaggccggcatgtttgaccagaagtcctccagc
catgagaggcgcgccttcctgcaggccatcctggagcacgaggagcaggacgagagcaga
cactgcagcacgggcagcggcagtgccagcttcgcccacactgcccctccgccagcgggc
gtcaaccccgacctggaggagccacctctaaaggaagaagacgaggtgcccgacgacgag
acggtgaaccagatgattgcccggcacgaggaggagtttgacctgttcatgcgcatggac
ctggaccgcaggcgtgaggaggcccgaaaccccaagcggaagccgcgcctgatggaggag
gatgagctcccctcgtggatcatcaaggacgatgccgaggtagagcgtctgacctgtgag
gaggaagaggagaaaatgtttggccgaggctcccgccaccgcaaggaggtggactacagt
gactcgctgaccgagaagcagtggctcaagaccctgaaggccatcgaggagggcacgctg
gaggagatcgaagaggaggtccggcagaagaaatcctctcggaagcgcaagcgggacggc
gacgccggctcctccaccccgaccaccagcacccgcagccgcgacaaggacgatgacagc
aagaagcagaagaagcgcgggcggccacccgccgagaagctctcccccaaccctcccaac
ctcaccaagaagatgaagaagatcgtggatgccgtgatcaagtacaaggacagtagtagt
ggacgtcagctcagcgaggtgttcatccagctgccgtcccgcaaggaactgcccgagtac
tacgagctcatccgcaagcctgtggacttcaagaagataaaggagcgcatccgcaaccac
aagtatcgcagcctcaatgacctggagaaggacgtcatgctgctgtgccagaacgctcag
accttcaacctggagggctccctgatctacgaagattccattgtcctgcagtcagtgttc
accagtgtgcggcagaaaattgaaaaagaggacgacagtgagggcgaggagagcgaggag
gaggaggaaggcgaggaggaaggctccgagtctgagtcccgctctgtcaaagtgaagatc
aagctcggccggaaggagaaggcacaagataggctgaaggggggccgacggcgaccgagc
cgcggatcccgggccaagccggtggtgagcgatgatgacagtgaagaggagcaggaggag
gaccgctcaggaagtggcagcgaggaagactga
DBGET
integrated database retrieval system
