Leopardus geoffroyi (Geoffroy's cat): 123606440
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Entry
123606440 CDS
T10761
Symbol
COL1A2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf04151
PI3K-Akt signaling pathway
lgf04510
Focal adhesion
lgf04512
ECM-receptor interaction
lgf04518
Integrin signaling
lgf04611
Platelet activation
lgf04820
Cytoskeleton in muscle cells
lgf04926
Relaxin signaling pathway
lgf04933
AGE-RAGE signaling pathway in diabetic complications
lgf04974
Protein digestion and absorption
lgf05146
Amoebiasis
lgf05165
Human papillomavirus infection
lgf05205
Proteoglycans in cancer
lgf05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
123606440 (COL1A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123606440 (COL1A2)
04518 Integrin signaling
123606440 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123606440 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
123606440 (COL1A2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
123606440 (COL1A2)
09152 Endocrine system
04926 Relaxin signaling pathway
123606440 (COL1A2)
09154 Digestive system
04974 Protein digestion and absorption
123606440 (COL1A2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
123606440 (COL1A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
123606440 (COL1A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
123606440 (COL1A2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
123606440 (COL1A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
123606440 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lgf00536
]
123606440 (COL1A2)
Glycosaminoglycan binding proteins [BR:
lgf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123606440 (COL1A2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
123606440
NCBI-ProteinID:
XP_045350756
LinkDB
All DBs
Position
A2:98065181..98124906
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AA seq
1367 aa
AA seq
DB search
MLSFVDTRTLLLLAVTSCLATCQSLEEATARKGPTGDRGPRGERGPPGPPGRDGDDGIPG
PPGPPGPPGPPGLGGNFAAQYDPGKGVGLGPGPMGLMGPRGPPGASGAPGPQGFQGPAGE
PGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGI
RGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGS
VGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEMGLPGVSGPVGPPGN
PGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGN
KGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPSGPPGLRGSPGSRGLPGADGRAGVMGP
SGPRGATGPAGVRGPNGDAGRPGEPGLMGPRGFPGAPGNVGPAGKEGPMGLPGIDGRPGP
IGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGV
QGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPPGESGA
AGPSGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGE
TGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGPAGPAGPAGPRGSPGERGEVGP
AGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGSAGPSGPNGPPGPAGSRGD
GGPPGATGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLRGPRGDQGPVGRTGETGASGP
PGFAGEKGPSGEPGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVSGSVGEPGPLGI
AGPPGARGPSGAVGAPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGA
VGAPGPHGPVGPTGKHGNRGEPGPAGVVGPVGAVGPRGPTGPQGIRGDKGEPGDKGPRGL
PGLKGHNGLQGLPGLAGQHGDQGAPGSVGPAGPRGPAGPSGPMGKDGRTGHPGSVGPAGV
RGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYDGDFYRADQPRSPPSLRPKDYEVDATL
KSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFST
GETCIRAQPENILAKNWYRNSKVKKHVWLGETINGGTQFEYNVEGVTTKEMATQLAFMRL
LANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSK
KTNEWKKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRVDVGPVCFK
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacgcggactttgttgctgcttgcagtaacttcgtgcctagca
acatgccaatctttagaagaggcaactgcaagaaagggcccaactggagatagaggacca
cgtggagaaaggggtccaccaggcccaccaggcagagatggtgacgacggtatcccaggc
cctcctggcccacctggtcctcctggcccccctggtcttggcgggaactttgcggctcag
tatgaccctggaaaaggagttggccttggccctggaccaatgggtttgatgggacctaga
gggcctcctggtgcatctggagctcctggtcctcaaggtttccaaggacctgctggtgag
cctggtgagcctggtcaaactggtcccgcgggtgctcgtggtccccctgggcctcctggc
aaggctggtgaggatggtcaccctggaaaacctggacgacctggtgagagaggagttgtt
ggaccacagggtgctcgtggtttccctgggactcctggacttcccggcttcaagggcatt
agggggcacaatggtctggatggattgaagggacagcctggtgctccaggtgtgaagggt
gaacctggcgcccctggtgaaaatggaactccaggtcaaacaggagctcgtgggcttcct
ggtgagagaggacgtgtcggtgcccctggcccagctggtgcccgtggaagtgatggaagt
gtgggtcctgtgggtcctgctggtcccattgggtctgctggccctccaggcttcccaggt
gctcctggccccaagggtgaacttggaccggtcggtaatcctggtcctgctggtcccgcg
ggtccccgtggtgaaatgggtcttccaggtgtttctggccctgttggacctcctggtaac
cctggagccaacggcctgactggtgcgaagggtgctgctggcttgcccggtgttgctggg
gcacctggcctccctggaccccgtggtattcccggccctgttggtgctgctggcgctact
ggtgccagaggactcgttggtgaacctggtccagctggttccaaaggagagagtggcaac
aagggtgagcccggctctgctggtcctcaaggtcctcctggtcccagtggtgaagaagga
aagagaggccccaatggtgaagccggatctgctggcccctctgggcctcctgggctgaga
ggaagtcctggttctcgtggtctccctggagctgatggcagagccggtgttatgggccct
tctggcccccgtggtgctactggccctgctggtgtccgaggccccaatggagatgctggt
cgccctggagagcccggcctcatgggaccccgaggttttcctggtgcccctggaaatgtt
ggcccagctggcaaagaaggtcccatgggcctccctggcattgatggccggcctggacca
attggcccagctggagcaagaggagagcctggcaacatcggattccctggccccaaaggc
cccactggtgatccaggcaaaaatggtgataaaggtcatgctggtcttgccggtgctcgg
ggtgctccaggtcctgatggaaacaatggtgctcagggaccccctggaccacaaggtgtc
caaggtggaaaaggtgaacagggtcccgctggtcctccaggcttccagggtctgcctggc
cctgcaggtacagctggtgaagttggcaaaccaggagaaaggggtctccctggtgaattt
ggtctccctggtcctgctggcccaagaggggagcgtgggccccctggtgaaagtggtgct
gctggtccttctggtcctattggaagccgaggtccttctggaccccctgggcctgatgga
aacaagggtgaacctggtgtgcttggtgctccaggcactgctggtccatctggtcccagt
ggactcccaggagagaggggtgctgccggcatacctggaggcaagggagaaaagggtgaa
actggtctcagaggtgaaattggtaacccaggcagagatggtgcccgtggtgctcctggt
gctgtaggtgcccctggtcctgctggagccactggtgaccggggtgaagccggtcctgcc
ggtcccgctggtcctgctggtcctcgtggtagccctggtgaacgtggtgaggttggtccc
gctggccccaacggatttgctggtcctgctggtgctgctggtcaacctggtgctaaagga
gagagaggaaccaaagggcccaagggtgaaaatggccccgttggtcccacgggccctgtt
ggatctgctggcccatctggtccaaatggtccccctggtcctgctggcagtcgtggtgat
ggtggccctcctggtgctactggtttccctggtgctgctggacggactggtcctcctgga
ccctctggtatcactggccctcctggtccccctggtgctgctggtaaagaaggacttcgt
gggcctcggggtgaccaaggtccagttggccgaacaggggaaacaggtgcatctggtccc
cctggctttgctggtgagaagggtccctctggagagcctggaactgctggaccccctgga
acccctggtcctcaaggtcttcttggtgctcctggtattctgggtctcccaggctctaga
ggtgaacgtggtctaccaggtgtttctggatctgtgggtgaacctggacccctcggcatc
gctggtccacctggggctcgtggtccctctggtgctgtgggtgcacctggagtcaatggt
gctcctggtgaagctggtcgcgatggcaaccctgggaatgatggtcccccaggccgcgac
ggtcaacctggacacaagggagaacgcggttaccctggcaacattggtccagttggcgct
gtgggcgcacctggtcctcatggccccgtgggtcccactggaaaacatggaaaccgtggt
gaacctggtcctgctggtgttgttggtcccgttggtgctgttggtccaagaggtcctact
ggcccacaaggtattcgaggtgataaaggagagcctggtgacaaggggcctagaggtctt
cctggcttaaagggacacaatggactgcaaggtcttcctggtcttgctggccaacatggc
gatcaaggtgctcctggctctgtgggtcctgctggtcctaggggccctgctggtccttct
ggccctatgggcaaagacggtcgcactggacatcctggttcagtcggacctgctggcgtt
cgtggctctcagggtagccaaggtcctgctggcccccctggtccccctggccctcctgga
cctcctggcccaagtggtggtggttatgattttggttacgacggggacttctacagggct
gaccagcctcgctcaccaccttctctcagacccaaggattatgaagtcgatgctactctg
aaatctctcaacaaccagattgagacccttcttactcctgaaggctctaggaagaaccca
gctcgcacatgccgtgacttgagacttagccaccccgagtggagcagtggttactactgg
attgaccctaaccaaggatgcactatggatgctatcaaagtatactgtgatttctctact
ggcgaaacctgtatccgggctcaacctgaaaacatcctagccaagaactggtacagaaat
tccaaggtcaagaagcacgtgtggttaggagaaactatcaatggtggtacccagtttgaa
tataatgttgaaggagtgaccaccaaggaaatggctactcaacttgccttcatgcgcctg
ctggccaaccatgcctctcaaaacatcacctaccactgcaagaacagcattgcatacatg
gatgaggagactggcaacctgaaaaaggctgtcattctgcaaggctccaacgatgttgaa
cttgttgccgagggcaacagcaggttcacttacactgttcttgtagacggctgctctaaa
aagacaaatgaatggaaaaagacaatcattgaatacaaaacaaataagccatcccgcctg
cctatccttgatattgcacctttggacatcggtggtgctgaccaagaaatcagggtggac
gttggcccagtctgtttcaaataa
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