Leopardus geoffroyi (Geoffroy's cat): 123606755
Help
Entry
123606755 CDS
T10761
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03018
RNA degradation
lgf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123606755 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
123606755 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123606755 (LSM8)
03041 Spliceosome [BR:
lgf03041
]
123606755 (LSM8)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123606755 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
123606755 (LSM8)
Spliceosome [BR:
lgf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123606755 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
123606755
NCBI-ProteinID:
XP_045351372
LinkDB
All DBs
Position
A2:136728664..136736545
Genome browser
AA seq
145 aa
AA seq
DB search
SDPLNLLGCNSRDICFRHSAGAAAGPWRAFLAPLVRFAAVLLRAAGPSIMTSALENYINR
TVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIG
EIDEETDSALDLGNIRAEPLNSVAH
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
tccgatcctcttaacctgctgggctgtaactctcgcgatatttgcttccgccactcggcg
ggagccgctgccggtccctggcgggcctttttagctcctcttgtccgctttgctgctgtg
ttgcttagagcggccgggccgagtatcatgacgtccgccttggagaactacatcaaccga
actgttgcagttattacttctgatgggagaatgattgtgggaacactgaaaggttttgac
cagaccattaatttgattttggatgaaagccatgaacgagtattcagctcttcacaggga
gtagaacaggtggtgctagggctatacatcgtaagaggtgacaatgttgcagtcattgga
gaaattgatgaagagacagattctgcgcttgatttggggaatattcgagcagaacctcta
aactctgtagcacactga
DBGET
integrated database retrieval system
