Leopardus geoffroyi (Geoffroy's cat): 123606918
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Entry
123606918 CDS
T10761
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123606918 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lgf03000
]
123606918 (CNOT4)
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123606918 (CNOT4)
04121 Ubiquitin system [BR:
lgf04121
]
123606918 (CNOT4)
Enzymes [BR:
lgf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123606918 (CNOT4)
Transcription factors [BR:
lgf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
123606918 (CNOT4)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123606918 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123606918 (CNOT4)
Ubiquitin system [BR:
lgf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123606918 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
123606918
NCBI-ProteinID:
XP_045351721
LinkDB
All DBs
Position
A2:complement(151275959..151424586)
Genome browser
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
IADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHTAPTSNPATTDSLSW
DSPGSWTDPAIITGIPATSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgatgcgaaggaagaccctgtggaatgtcctctttgcatggagccc
ttggagatagatgatatcaactttttcccttgcacctgtggctatcagatttgccgattt
tgttggcatcgaattcgcactgatgaaaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttataaaccactctcccaggaagaattgcagaggataaagaat
gagaaaaaacagaaacagaatgagagaaaacagaaaatatcagaaaatcgcaaacatttg
gctagtgtacgtgttgtacaaaaaaacctcgtctttgttgtaggtctgtctcagcgccta
gcagaccctgaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccaagcgccagtgcttat
gtaacctatatccggtcagaagatgctctcagagccatacagtgtgtcaacaatgtggta
gtagatggcagaacacttaaggcatctctaggtacaacaaaatactgcagttacttctta
aagaatatgcagtgtccgaagcctgactgcatgtatctacatgaattgggggatgaggcg
gccagcttcacaaaagaggaaatgcaggcgggtaaacaccaagaatatgaacagaaacta
cttcaagaattgtataaattaaaccccaattttcttcaactgtccacgggttcagttgat
aagaataagaacaaagtgacgccactgcagaggtatgatacccccattgacaaaccttca
gattctctcagtatagggaatggtgataattcacagcagatatctaacagtgatacgcct
tcaccaccacctggtttatcaaaatccaaccctgtcatccccatcagttcatccaatcac
agtgcacggtctccttttgaaggggcagtaactgagtcacagtcgttattctcagataac
tttcgccatcccaacccgatcccaagtgggcttcctcctttccccagctccccacagacg
tccagtgactggcctacagcaccagagccacagagtctcttcacatcagaaacaatcccg
gtatcgtcctccacagactggcaagcagcatttggctttggttcttctaaacaaccagag
gatgacttgggtttcgatccctttgacgtcactcgaaaagccttagcagacctgattgaa
aaggaactgtcagtccaagaccagccttccctttcgcccacgtctcttcagaactcctct
tcacacactacaaccgccaaaggtccgggctctggattcctgcatcctgctgcaccgaca
aacgccaactctctcaatagtaccttttcagtcttgccacagaggttccctcaatttcag
cagcaccgagcagtttataattcattcagttttccaggccaggcagcccgctatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatccct
atagcagacaacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctacccaacattaacatcaactttggtggactgcccaattcttcctccccc
tccaacgccaaccacactgcaccaacgtccaaccccgccaccaccgacagcctgagttgg
gacagccctggcagctggacagacccagccatcatcacaggtattccagcaacttcagga
aacagtttagactctcttcaagatgacaatcctccacactggctaaaatcccttcaggcc
ctcacagagatggacggccccagtgctgctccatcgcagacccaccacagcgcccccttc
agcacacagatccctctgcacagagccagttggaacccctaccctcctccttcaaaccct
tccagcttccactccccacccccaggctttcagacagccttcagaccccccagcaaaacc
cccacagatttactacagagttcaacactggaccgccattag
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