Leopardus geoffroyi (Geoffroy's cat): 123608161
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Entry
123608161 CDS
T10761
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03018
RNA degradation
lgf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123608161 (LSM2)
09123 Folding, sorting and degradation
03018 RNA degradation
123608161 (LSM2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123608161 (LSM2)
03041 Spliceosome [BR:
lgf03041
]
123608161 (LSM2)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123608161 (LSM2)
mRNA degradation factors
5'-3' decay
Lsm complex
123608161 (LSM2)
Spliceosome [BR:
lgf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123608161 (LSM2)
Complex C
U2 snRNP components
123608161 (LSM2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
123608161
NCBI-ProteinID:
XP_045353698
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All DBs
Position
B2:complement(30802904..30809503)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgctcttctattcctttttcaagtccctcgtgggcaaggatgtggtcgtggaactcaag
aatgacctgagcatctgtggaaccctccattctgtggatcagtatctcaacatcaaacta
actgacatcagtgtcacagaccctgagaaataccctcacatgttatcagtgaagaactgc
ttcatccggggctcagtggtccgctatgtgcagttgccggcagatgaggtcgacacacag
ttgctacaggacgcagcaaggaaggaggccctgcagcagaaacagtga
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