Leopardus geoffroyi (Geoffroy's cat): 123608225
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Entry
123608225 CDS
T10761
Symbol
RXRB
Name
(RefSeq) retinoic acid receptor RXR-beta isoform X1
KO
K08525
retinoid X receptor beta
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03320
PPAR signaling pathway
lgf04659
Th17 cell differentiation
lgf04919
Thyroid hormone signaling pathway
lgf04920
Adipocytokine signaling pathway
lgf04928
Parathyroid hormone synthesis, secretion and action
lgf05200
Pathways in cancer
lgf05202
Transcriptional misregulation in cancer
lgf05207
Chemical carcinogenesis - receptor activation
lgf05216
Thyroid cancer
lgf05222
Small cell lung cancer
lgf05223
Non-small cell lung cancer
lgf05226
Gastric cancer
lgf05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
123608225 (RXRB)
09152 Endocrine system
04920 Adipocytokine signaling pathway
123608225 (RXRB)
03320 PPAR signaling pathway
123608225 (RXRB)
04919 Thyroid hormone signaling pathway
123608225 (RXRB)
04928 Parathyroid hormone synthesis, secretion and action
123608225 (RXRB)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
123608225 (RXRB)
05202 Transcriptional misregulation in cancer
123608225 (RXRB)
05207 Chemical carcinogenesis - receptor activation
123608225 (RXRB)
09162 Cancer: specific types
05226 Gastric cancer
123608225 (RXRB)
05216 Thyroid cancer
123608225 (RXRB)
05222 Small cell lung cancer
123608225 (RXRB)
05223 Non-small cell lung cancer
123608225 (RXRB)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
123608225 (RXRB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lgf03000
]
123608225 (RXRB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lgf03310
]
123608225 (RXRB)
Transcription factors [BR:
lgf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
123608225 (RXRB)
Nuclear receptors [BR:
lgf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
123608225 (RXRB)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
123608225
NCBI-ProteinID:
XP_045353836
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Position
B2:complement(32233348..32240115)
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AA seq
589 aa
AA seq
DB search
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAAAGEQQTP
EPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGAPPPSPPGLPLPPSAAPTLGGSGAPPP
PPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQVRGRGSLTASPLSFPCFPCD
PRSLCELPHGPLTFQSSNPGRPVVLVRPLALPEINSTVSLPGGGSGPPEDVKPPVLGVRG
LHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCT
VDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAE
LAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQ
VILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTEL
VSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQG
RFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctgctcgcccgcccttcctcccccagcggcatgccgcagggcagtgtggg
ccggtgggggtgcgaaaagaaatgcattgtggggtcgcctcccggtggcggcggcgacgg
ccctggctggatcccgcggcggcggcggcggcggcagcagccggagaacaacaaaccccg
gagccggagccaggggaggctggacgggacgggatgggcgacagcgggcgggactctcga
agcccagacagttcctccccgaatccccttccccagggggcccctcccccttctcctcct
ggcctacccctacccccttcagcagccccgacccttggaggttccggggccccaccccca
cccccgatgccaccccctccactgggctcccctttcccagtcatcagctcttccatgggg
tcccctggtctgccccctccagctcccccaggattctccgggcctgtcagcagtccccag
gtgagaggtcgtggctcactgactgcctctccactttcatttccttgttttccttgtgac
cccagatccttgtgtgaacttccccatggcccactgaccttccagtcctctaatcctggc
aggcctgtggtccttgtgagaccccttgcccttcctgagattaactcaacagtgtcgctc
cctgggggtgggtctggcccccctgaagatgtgaagccaccagtcttaggggtccggggc
ctgcactgtccaccccctccaggtggccctggggctggtaaacggctatgtgcaatctgc
ggggaccgaagctcaggcaaacactacggggtttacagctgtgagggctgcaaaggcttc
ttcaagcgtaccatccgtaaggacctgacctactcgtgccgggacaacaaggactgcaca
gtggacaagcgccagcgaaaccgctgtcagtactgccgttatcagaagtgcctggccact
ggcatgaagagggaggcggtacaggaggaacgtcagcgggggaaggacaaggacggggat
ggggagggggctgggggagcccccgaggagatgcctgtggacaggatcctggaggcagag
cttgccgtggagcagaagagtgaccagggcgttgagggtcctgggggaaccgggggtagc
ggcagcagcccaaatgaccccgtgactaacatctgtcaggcagctgacaaacagctattc
acgcttgttgagtgggcgaagaggatcccacatttttcttccttgcctctggatgaccag
gtcatattgctacgggcaggctggaacgagctcctcattgcttccttctcccaccgatcc
attgatgtccgagatggcatcctcctcgccacaggtcttcatgtgcaccgcaactcagcc
cattctgcaggcgtgggagccatctttgatcggtccctctccagggtgctgacagagcta
gtgtccaaaatgcgtgacatgaggatggacaagacagagcttggctgcctgagggcaatc
attctgttcaatccagatgccaagggtctctccaaccccagtgaggtggaggttctgagg
gagaaagtgtatgcatcactggagacctactgcaaacagaagtaccctgagcagcaggga
cggtttgccaagctgctgctacgtcttcctgccctcaggtccatcggccttaagtgtcta
gaacatctgtttttcttcaagctcattggagacacccccattgacaccttcctcatggag
atgcttgaggctccccaccagctggcctga
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