Leopardus geoffroyi (Geoffroy's cat): 123609213
Help
Entry
123609213 CDS
T10761
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03082
ATP-dependent chromatin remodeling
lgf04714
Thermogenesis
lgf05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123609213 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
123609213 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
123609213 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lgf03000
]
123609213 (ARID1B)
03021 Transcription machinery [BR:
lgf03021
]
123609213 (ARID1B)
03036 Chromosome and associated proteins [BR:
lgf03036
]
123609213 (ARID1B)
Transcription factors [BR:
lgf03000
]
Eukaryotic type
Helix-turn-helix
ARID
123609213 (ARID1B)
Transcription machinery [BR:
lgf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123609213 (ARID1B)
Chromosome and associated proteins [BR:
lgf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123609213 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
123609213
NCBI-ProteinID:
XP_045356079
LinkDB
All DBs
Position
B2:141301399..141755918
Genome browser
AA seq
2442 aa
AA seq
DB search
MAARAAAAAAAAARARAGSGERRAPPGPRPAPGARDLEAGARGAAAAAPGPMLGGGGDGG
GLNNVHHHPLHPRHELNMAHNASTAAAAASTNSAKSGGSEAALKEGGSAAALSSSSSAAA
AAAAAASSSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHL
HHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNSLGGAGGGAAQPGPDMEQPQHG
GAKDSAAGSQADPPGQPLLSKPGDEDDAPPKMGEPAGGRFEHPGLGALGAQQPPVAVPGG
GGGGGGGGGGPAAVSEFNNYYGSAAPASGGPGGRTGPCFDQHGGQQSPGMGMMHSASAAA
GAPNSMDPLQNSHEGYPNSQYNHYPGYSRPSAGGGGGGGGGGGGGGGGGGGGSGGGGGGG
GGGAGAGAVAAAAAAAAAAAGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLS
KAAAGAAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSPSAPPPPPP
SQPQSQAAAAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPG
PTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPISIQGRTP
GAMGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQPPHLTPQAQYLPPQPQQRYQP
QQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLTSEDTAFGLKDLSGSID
DLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGS
NQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMSQYG
PQQTGPSMSPHPSPGGQMHPGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPAYSGVPSAS
YSGPGPGMGINANNQMHGQGPSQPCGAMPLGRMPSAGMQNRPFPGNMSSMTPSSPGMSQQ
GGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRPPYIRSPAYPSQSGAGGRPMFSSQHP
NYGNSQAPMMHQPDQYGQGSFPGMNQSGLMASSSPYSQPVNNSSGLMNTQAPPYSMAPNM
VNSSTASMGLADMMSPGESKLPLPLKADGKEEGTPQPESKSKDSYSSQGISQPPTPGNLP
VPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPERK
LWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYICVKEIGGLAQVNKNKKWRELATNLN
VGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTADTKKQPKLQPPSPANSGSLQ
GPQTPQSTSSNSMADVQGDLKPPTPASTPHGQMTPMQGGRSGTVSVHDPFSDASDSSFPK
RNSMTPSAPYQQSMSMPDVMGRMPYEPNKDPFGGMRKVPGSSEPFMTQGQMPTSSVQDVY
NQSPSGALSGLGMGRQQFPYGAGYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQPN
YKRHMDGMYGPPAKRHEGDMYNMQFGSQQQEMYNQYGSSYSGPDRRPIQGQYPYPYNRER
VQGPGQMQPHGIPPPMMGGPMQSSSSEGPQQSMWATRNDMPYPYQNRQGPGGPAQAPPYP
GMNRTDDMLVPEQRINHESQWPSHVSQRQPYMSSPASMQPITRPPQSSYQTPPSLPNHIS
RAPSPASFQRSLESRMSPSKSPFLPSLKMQKVLPTVPTAQVTGPPPQPPPIRREITFPPG
SVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATF
SLSQLSGFLELLVEYFRKCLIDIFGILTEYEVGDPSQKALDHNAGKRADGQSLADESGKE
EEGTECVDEEDDEEDDEEDDEEEDDGKTETEEKSSSTLASPNATADPKEKPRQASKFDKL
PIKIVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPP
PPLSSTGRKKEQEGKGDSDEQQEKSIIATIDDVLCARPGALPEDANPGAQTESGKFPFGI
HQAKSHRNIKLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSK
HPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVT
LANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLC
KLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAAR
AIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMAR
VDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7329 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgggcagcagcggcggcggcggcggcggcgcgggcgcgggcgggcagcggc
gagcggcgggcgccccccgggccgcggccggcgcccggggcccgggacctggaggcgggg
gcgcgcggcgcggcggcggcggcaccgggacccatgctggggggcggcggcgacggcggc
ggcctgaataatgtgcaccaccaccccctgcacccccgtcacgaactgaacatggcccat
aacgcgagcacggcggccgccgccgccagcactaacagcgccaagagcggcggctccgag
gcggctctcaaggagggtggaagcgccgccgcgctgtcctcctcctcctccgcggcggcg
gcggcggcggcggcggcgtcctcctcttcctcctcgtcgggcccgggctcggccatggag
acggggctgctccccaaccacaaactgaaaaccgttggcgaagcccccgccgcaccgccc
caccagcagcaccaccaccaccaccatgcccaccaccaccaccaccatgcccaccacctc
caccaccaccaccacgcactacagcagcagctaaaccagttccagcagcagcagcagcag
cagcaacagcaacagcagcagcagcagcagcagcaacatcccatttccaacaacagcctc
ggcggcgcgggcggcggcgccgctcagcccggtcccgacatggagcagccgcaacatgga
ggcgccaaggacagtgccgcgggcagccaggccgaccccccgggccagcctctgctgagc
aagccgggcgacgaggacgacgcaccgcccaagatgggggagccggcgggcggccggttc
gagcaccctggcctgggcgccctgggcgcgcagcagccgccggtcgccgtgcccgggggc
ggcggcggcggcggtggcggcggcggcggcccggcggccgtctcggagtttaataattac
tatggcagcgctgcccctgctagcggcggccccggcggccgcactgggccttgctttgat
caacatggcggacaacaaagccccgggatggggatgatgcactccgcctcagccgccgcc
ggagcccccaacagcatggaccccctgcagaactcccacgaagggtaccccaacagccag
tacaaccattatccgggctacagccggcccagcgcgggcggcggcggcggcggcggcggt
ggaggaggaggaggaggaggaggaggaggcggcggcagcggaggaggaggaggaggagga
ggaggaggagcaggagcgggagctgtggcggcggcggccgcggcggcggcggcagcagca
ggaggcggcggcggcggctatgggggctcgtcctcggggtacggggtgctgagctccccc
cggcagcagggcggcggcatgatgatgggccccgggggcggcggggccgcgagcctcagc
aaggcggccgccggcgcggcggcggggggcttccagcgcttcgccgggcagaaccagcac
ccgtcgggggccaccccgaccctcaaccagctgctcacctcgcccagccccatgatgagg
agctacggcggcagctaccccgactacagcagccccagcgcgccgccgccgccgccgccg
tcgcagccccagtcccaggcggcggcggcggcggcggcgggggcggcggcgggcggccag
caggcggccgcgggcatgggcttgggcaaggacatgggcgcccagtacgccgctgccagc
ccggcctgggcggccgcgcaacaaaggagccacccggcgatgagccccggcacccccggc
ccgaccatgggcagatcccagggcagcccaatggatcctatggtgatgaagaggccgcag
ttatatgggatgggcagtaaccctcattctcagcctcagcagagcagcccttaccccgga
ggctcctacggtcccccagggccacagcgctatccaatcagcatccagggtcggacccca
ggggccatgggaggaatgcagtacccacagcagcagatgccgcctcagtatggacagcaa
ggcgtgagtggttactgccagcagggccagcagccttactacaaccagcagccgcagccc
ccgcacctcaccccgcaggcgcagtatctgccgccccagccccagcagcggtaccagccc
cagcaggacatgtctcaggaaggctatggaactaggtctcaacctcctttggctcctgga
aaacctaaccacgaagacttgaacttaatacagcaagaaagaccatcaagtttaccagtt
gaagtcttgacctcggaggataccgcctttggactcaaggacctgtctggctccattgat
gacctccccacgggaacggaagccactctgagctcagcagtcagtgcgtctggatccacg
agcagccaaggggatcagagcaaccctgctcagtcgcctttctctccacacgcatccccc
catctctccagcatccccgggggcccgtcgccttctcctgtcggctctcccgtgggaagc
aaccagtcacgatctggcccaatttctcccgcaagtattccaggcagtcagatgcctcct
cagccacctgggagccagtcagaatccagttcccatcctgccttgagccagtcaccaatg
ccacaggaaagaggttttatggcaggcacacaaagaaaccctcagatgtctcaatatgga
cctcaacagacaggaccatccatgtcgcctcatccttctcctggaggccagatgcatcct
ggaatcagtagctttcagcagagtaactcaagtgggacttatggtccgcagatgagccag
tatggaccacaaggtaactactccagacccccagcgtatagtggggtgcccagtgcaagc
tacagcggcccagggcccggcatgggcatcaatgccaacaaccagatgcacggacaaggg
ccaagccagccgtgtggtgctatgcccctgggacgaatgccatcagctgggatgcagaac
aggccgtttcctggaaatatgagcagcatgacccccagctctcccggcatgtcccagcag
ggagggccaggaatggggccaccgatgccaaccgtgaaccgtaaggcacaggaggcagct
gccgcagtgatgcaggccgctgcaaactcggcacaaagcaggccaccatacattaggtcg
cctgcttatcccagccagtctggggctggcggacgccccatgttttcttcccagcacccc
aactatggcaactctcaggctcccatgatgcaccagcctgaccagtacgggcaaggcagt
ttcccgggcatgaaccagagtggacttatggcttccagctctccctacagccagcccgtc
aacaacagctctgggctcatgaacacccaggcacccccctacagcatggcgcccaatatg
gtgaacagctcaacagcatctatgggtcttgcagatatgatgtctcctggcgaatccaaa
ttgcccctgcctctcaaagcggacggtaaagaagaaggcactccacagcccgagagcaag
tcgaaggatagctacagctctcagggtatatctcagcccccaacccccggcaacctgcca
gtcccttccccaatgtcccccagctctgctagcatctcctcatttcatggagatgaaagt
gatagcattagcagcccaggctggccaaagactccatcaagccctaagtccagctcatcc
accaccactggggaaaagatcacaaaggtgtatgagttggggaatgagccggagagaaag
ctgtgggtcgaccgataccttaccttcatggaagaaagaggctcccccgtctccagtctg
cccgcggtgggcaagaagcccttggacctgttccggctctacatctgcgtcaaagagatc
ggaggtttggcacaggttaataaaaacaagaagtggcgtgagctggcaaccaacctaaat
gttggcacttcaagcagtgccgcgagctccctgaaaaagcagtatatccagtacctgttt
gcctttgagtgcaagattgagcgcggggaggagcccccgccggaagtcttcagcaccgcg
gacaccaagaagcagccgaagctccagccgccctctcctgcgaactcagggtccttgcaa
ggtcctcagaccccccagtcaaccagcagcaattcgatggcagacgtacaaggcgacctg
aagccacctaccccagcgtctaccccgcatggacagatgaccccaatgcaaggtggaaga
agcggtacagtcagcgtgcacgacccgttctcagacgccagtgactcatcgttcccaaaa
cggaactccatgaccccgagcgccccgtaccagcagagcatgagcatgcctgacgtgatg
ggcaggatgccctatgaacccaacaaggaccccttcggtggaatgagaaaagtgcctggg
agcagtgagccctttatgactcaaggacagatgcccactagcagtgtgcaggacgtgtat
aaccagagtccctccggagcgctatccggtctgggcatggggcggcagcagtttccctac
ggagccggctacgaccgaaggcacgaaccttacgggcagcagtacccaggccaaggccct
ccctcaggacagccgccatatggaggacaccagcccggcctgtatccacagcagccgaat
tacaaacgccatatggacggcatgtatgggcctccggccaaacgccacgagggagacatg
tacaacatgcagttcggcagccagcagcaagagatgtacaaccagtacggaagttcctac
tccggaccggacaggaggcccatccaggggcagtatccgtacccctacaacagagagagg
gtgcagggccccgggcagatgcagccgcacgggatcccgcctcccatgatgggcggcccc
atgcagtcgtcctccagcgaagggcctcagcagagcatgtgggcgacgcgcaatgatatg
ccttacccctaccagaaccggcagggccccgggggcccggcccaggcccctccgtatcca
ggcatgaaccgcacggatgatatgctggtacctgagcaaaggatcaatcacgagagccag
tggccttcccacgtcagccaacgtcagccttatatgtcctctcccgcctccatgcagccc
atcacgcgcccgcctcagtcatcctaccagacgcccccatcactgccaaaccacatctcc
agagcccccagccccgcgtccttccagcgctccctggagagccgcatgtctcccagcaag
tctccctttctgccctctctgaagatgcagaaggtcctgcccaccgtccccacggcccag
gtcacgggcccgcccccgcagccacccccgatccgaagggagatcaccttccctcccggc
tcagtcgaggcatcgcagccagtcttgaaacaaaggcgaaagattacctcaaaagatatc
gttactcctgaggcctggcgtgtgatgatgtccctcaagtccggtcttttggctgaaagt
acatgggctctggacaccattaacattctcctgtacgatgacagcactgtcgccaccttc
agtctctcccagctgtccggatttctggaacttttagtagagtactttagaaaatgccta
attgacatttttggaattcttacggaatatgaggtgggagaccccagccaaaaagcactt
gatcacaatgcggggaagagagctgacggccagtccttggccgacgagtctgggaaagag
gaggagggcaccgagtgtgtggacgaggaggatgacgaggaggacgacgaggaggacgac
gaggaggaggacgacgggaagacggagaccgaggagaagagcagctcgactctggcctct
cccaacgccactgcggatccgaaggagaagcccaggcaagctagcaagttcgacaagctc
ccgataaagatagtcaaaaagaacaacctgtttgtggtcgaccgatctgacaagctgggt
cgtgttcaggagttcaacagcggacttctgcactggcagcttggtgggggggacaccacc
gagcacatccagactcactttgagagcaagatggaaattcctcctcgcaggcgtccacct
ccccctctgagctccaccgggaggaagaaagagcaggaaggaaaaggcgattctgacgag
cagcaagagaagagcatcatcgcaaccatcgatgatgtcctctgtgctcggccgggggcg
ctgcccgaagatgcaaaccctggtgcccagaccgagagcgggaagtttccctttgggata
catcaagccaaaagtcaccggaacatcaagctgctggaggacgagcccaggagccgagac
gagactcctctctgcaccatcgcgcattggcaggattccctggccaagcgctgcatctgt
gtgtcgaatattgtccgtagcttgtcttttgtgcctggcaatgacgccgaaatgtccaaa
catccaggcttggtgctgatcctggggaagctgattctccttcaccacgagcatccagag
aggaagcgagcgccgcagacctacgagaaagaggaagacgaggacaaaggggtggcctgc
agcaaagacgagtggtggtgggactgcctggaggtcctaagggacaacacgctggtcacg
ttggccaacatttccgggcaactagacttgtctgcgtacacagaaagcatctgcctgccg
attctggacggcttgctgcactggatggtgtgcccgtcggcagaggcacaagaccccttt
ccaaccgtgggacccaactctgtcctgtcgcctcagagacttgtgctggagaccctctgc
aaactcagtatccaggacaacaacgtggacctgatcttggccacgcctccatttagtcgc
caggagaaattctacgctacgttggttaggtacgttggggatcgcaaaaacccagtctgt
cgagaaatgtccatggcgctcttatcgaaccttgcccaaggggacgcgctggcagcaagg
gcgatagctgtgcagaagggaagcatcggaaacttgataagcttcctagaggacggggtc
accatggcccagtatcagcagagccagcataacctcatgcacatgcagccgccgcctcta
gaaccacctagcgtggacatgatgtgcagggcggccaaggctctgctggccatggccagg
gtggacgagaaccgctcggagttccttctgcacgagggtcgattgctggatatctcgata
tcagccgtcctgaactctctggttgcgtctgtcatctgtgatgtactgtttcagattggg
cagttatga
DBGET
integrated database retrieval system
