Leopardus geoffroyi (Geoffroy's cat): 123609588
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Entry
123609588 CDS
T10761
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lgf Leopardus geoffroyi (Geoffroy's cat)
Pathway
lgf03013
Nucleocytoplasmic transport
lgf03015
mRNA surveillance pathway
lgf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123609588 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
123609588 (DDX39B)
03015 mRNA surveillance pathway
123609588 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgf03019
]
123609588 (DDX39B)
03041 Spliceosome [BR:
lgf03041
]
123609588 (DDX39B)
Enzymes [BR:
lgf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123609588 (DDX39B)
Messenger RNA biogenesis [BR:
lgf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123609588 (DDX39B)
Spliceosome [BR:
lgf03041
]
Complex C
Other components
EJC/TREX
123609588 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123609588 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123609588
NCBI-ProteinID:
XP_045356658
LinkDB
All DBs
Position
B2:complement(30567639..30578966)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagaagatgaggtggagaca
gcagcagggggagacggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctactgaagccagagttgctccgggccatt
gttgactgtggctttgagcatccgtcagaagtccaacatgagtgcatccctcaggccatt
ttgggaatggatgttctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacagctggagccggttactggacaggtgtctgtgctggtgatgtgt
catactcgggagttggcttttcagatcagcaaggagtatgagcgcttttctaaatacatg
cccaatgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctggcccagcttctagtggagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggccaccaacctgtttggccgaggcatggacattgaacgggtgaacattgccttc
aactatgacatgcctgaggattctgacacctacctgcatcgggtggcccgagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagatgaaaacgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatt
tcctcctacattgaacagacgcggtag
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integrated database retrieval system
