Lottia gigantea (owl limpet): LOTGIDRAFT_117320
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Entry
LOTGIDRAFT_117320 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
lgi
Lottia gigantea (owl limpet)
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lgi03016
]
LOTGIDRAFT_117320
Enzymes [BR:
lgi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
LOTGIDRAFT_117320
Transfer RNA biogenesis [BR:
lgi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LOTGIDRAFT_117320
Prokaryotic type
LOTGIDRAFT_117320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
20231480
NCBI-ProteinID:
XP_009054361
JGI:
117320
UniProt:
V4C133
LinkDB
All DBs
Position
Unknown
AA seq
312 aa
AA seq
DB search
MSPLIQIFQAPPPPLLGRLDKGRKVALLLAYCGAGYYGIQIQKDYPTIESELLSALVKCK
CLTQEQADTPNKIQFQRAARTDKGVSALGNIISLKISILYFLFDYLFVTLDDVVDVINKE
LPNQIRVLSYIRTTKGFNSKNFCDSRTYMYMIPTYAFTPVNQVFNDDYRISDENFTLLNT
VLSKYKGTHNFHNYTSGIKPTDASANRFIIKFEADKPTIEDDIEFITLKVTGQSFMLHHI
RKMVALTICVVKGLCGIETIEKSWLHDKMDVPRAPSEGLFLCQTHYTGYNRRYGTDGIHD
PLDWSHCQVSTI
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgtcacctttaattcaaatattccaggcaccaccaccaccattgttaggtaggttagat
aaaggtagaaaagtggcgttattattagcatattgtggtgcaggatattatggtatacaa
atacagaaagattaccccactattgaatcagagttattaagtgctctagtaaaatgtaaa
tgtttaacacaagaacaggctgatactcctaataaaatacaatttcaaagagcagcacga
actgataaaggagtgtctgctttaggcaatattatatctttaaagataagtatattatat
tttctatttgactatctatttgtgacacttgatgatgttgttgatgtcataaataaagaa
ttaccaaaccagatcagagttttaagttatatacgaactacaaaaggttttaatagtaag
aatttctgtgattccagaacttatatgtatatgatacctacatacgctttcactcctgta
aaccaggtatttaatgatgactatagaatcagtgatgagaattttaccctgttgaataca
gtactatctaaatataaaggaactcataattttcataattatacttctgggattaaacca
acagatgcaagtgctaatagatttatcattaagtttgaggctgataaaccaactattgaa
gatgatatagaatttataacattaaaagttacaggacaaagttttatgttacatcatatt
agaaagatggttgctttaacaatatgtgttgttaagggtttatgtgggatagaaactata
gaaaagtcatggcttcatgataagatggatgtaccaagagcaccaagtgaaggtttattt
ttatgtcagacacattatactggttataatagaagatatggtacagatggtatacatgac
cctttagattggtcacattgtcaggttagtacaatatga
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