Lottia gigantea (owl limpet): LOTGIDRAFT_141957
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Entry
LOTGIDRAFT_141957 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LOTGIDRAFT_141957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lgi03041
]
LOTGIDRAFT_141957
Enzymes [BR:
lgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOTGIDRAFT_141957
Spliceosome [BR:
lgi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
LOTGIDRAFT_141957
Complex B
LOTGIDRAFT_141957
Complex C
U2 SnRNP specific factors
LOTGIDRAFT_141957
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
Motif
Other DBs
NCBI-GeneID:
20234513
NCBI-ProteinID:
XP_009050073
JGI:
141957
UniProt:
V4AZQ5
LinkDB
All DBs
Position
Unknown
AA seq
475 aa
AA seq
DB search
NCRGVREDIDTEDVQEAYFRFMEENPEFGVIKDDEDEYDYDSDGNVIPREKSKMIDPLPP
IDHSDFNYQPFEKNFYNEHSEISTLSSDQVNDLRHKLSIKVSGLDPAKPVCSFAHFGFDE
QLLSAIRKSEYTQPTPIQSQAIPVALGGRDIIGIAKTGSGKTAAFLWPLLIHVMDQKELE
PGEGPVGLILAPTRELSQQIYQEAKKFGKVYNINVVCAYGGGSMWEQSKACQDGAEIIVA
TPGRLIDLVKKKCTNLERVTYLVYDEADRMFDMGFEPQVRSIADHVRPTRQTLLFSATFR
KRVEKLARDILQDPIRIVQGEIGEANEDVTQHIEVLPPGPAKWSWLVKRLVGFTTEGSVL
IFVTRKSNSEELAANLKARDFTLGLLHGDISQMERNEIISAFKKKEFPILVATDVAGRVF
ISLTLEFIVRLAFYLKFNRPLQNSLIAHCMAFSVFISLIRCRKEDVKLHSFHSVK
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
aattgtaggggtgtacgagaagatatagatacagaagatgtacaggaggcgtatttccgg
tttatggaagagaacccagagtttggtgttattaaggatgatgaagatgaatatgattat
gacagtgatggaaatgttattcccagagaaaaatccaagatgattgatcctctaccacca
atagatcattcagattttaattatcaaccatttgagaagaatttttataacgaacattca
gagatatcaactttatcttctgatcaggttaacgacctacgacacaaactctccattaag
gtatctggattggatcctgctaaaccagtgtgtagtttcgctcattttggttttgatgaa
caattattatcagctataagaaaatctgagtacacccagccaactcctattcaatcacag
gctataccagttgctctaggtggtagagatattattggtattgctaaaacaggaagtggt
aaaacagctgcgttcctgtggccgttattaattcatgttatggatcagaaagaattggag
cctggtgaaggaccagtaggattaattttagcaccaactagagaactttctcaacagatt
tatcaggaagcgaagaaatttggtaaagtttataatattaatgtggtgtgtgcctacggt
gggggcagtatgtgggaacagtcaaaagcttgtcaagatggggcagaaataatagtagct
acccctggtcggttgatagatctagtaaaaaagaaatgtaccaatttagaacgagtaaca
tatctagtttatgatgaagcagatagaatgtttgatatgggatttgagcctcaagtaaga
tctatagctgaccatgttagaccaactagacaaactctgttattcagtgctacattcaga
aagagagtagagaagttagcgcgagatatattacaggatccaatacgtattgttcagggt
gaaataggagaggccaatgaagatgtcacccagcatatagaagttttacctcctggacct
gctaaatggtcatggttagtaaaacgtcttgttggcttcactacagagggcagtgtgtta
atttttgtcacgaggaaatctaacagtgaagaattagcagccaatttaaaagctcgagat
tttacgttgggtttacttcatggtgatatcagtcagatggaacgaaatgaaattatttca
gctttcaagaaaaaagaattcccaattttagtggcaactgatgtagcaggtagagttttt
atatccttgacccttgagtttattgtcagacttgctttctacctgaagttcaataggccc
ttgcaaaattccctcattgcacactgcatggcattttccgtcttcattagcctgatcagg
tgtagaaaagaagacgtaaaactccattcatttcattccgttaagtga
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