Lottia gigantea (owl limpet): LOTGIDRAFT_152814
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Entry
LOTGIDRAFT_152814 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOTGIDRAFT_152814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_152814
Enzymes [BR:
lgi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
LOTGIDRAFT_152814
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
LOTGIDRAFT_152814
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
DUF2087
SF-assemblin
Motif
Other DBs
NCBI-GeneID:
20235791
NCBI-ProteinID:
XP_009051572
JGI:
152814
UniProt:
V4AS73
LinkDB
All DBs
Position
Unknown
AA seq
526 aa
AA seq
DB search
MCTFTGLYFLISAIDTEFTGLQLDETTKASLFDTSDERYVKLKKNVSEFTMSQIGISAFV
NKESYRYEAHTFNFYLFPTAFGSFDVRFKCQASSLSFLCRYNFDFNKFVYDGVSYLNRDE
ELKLKEHLAKNTMFSGLEREVDEEVLQKICSDIAEWFVKSQVGEVFLIELDQNTREIKDY
VLHTEIRNRFPNVWTHKDQLGKFIVEHVSSKQRRELQDIDSSNRLEQEEKLLQTMLGFTK
VFRLLQDYNKIVVGHNMLTDLMLMFEKFHKPLPESFSEFKKEVHQILPRIYDTKHMSATI
RKELEETGLLEYTSLQKLYQAFSSDVGLQVVLFSPEIHHAAGCERYIKNDVPHEAGFDAF
MCGSVFLYIAHILSCRTIRSTEIQACSFTDYVPHLKRFLNKINIIRATINHVTLDGNDPI
SQRPQILFVRVRKNGFRLKSNQLAQWFSSYGTVDVKLQSNNTALVATGNFGCARQILRCF
KGHDRIVVSKYNVWKHSRLVRAVLWSAVVLSSGICMVTLLSSLEPS
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtgtacattcactgggttatattttctgatttcagccattgatacagaatttactggt
ttacaacttgatgaaacaaccaaagctagtttatttgatactagtgatgaaagatatgta
aagttaaagaaaaatgtctctgagtttaccatgtctcagattggaatatctgcttttgta
aataaagaatcctacagatatgaagcccacacgttcaacttttatttatttccaacagca
tttggttcttttgatgtcagatttaaatgtcaggcatcaagtttgtcctttctgtgtcga
tacaactttgattttaacaagtttgtatatgatggtgtatcatatttgaatagagatgaa
gagttgaaattaaaagaacacctggctaaaaacaccatgttttctgggttagagagagaa
gtagatgaagaagtcctgcagaagatatgttcagatatagcagaatggtttgtcaaaagt
caagtcggtgaagttttcctcatagaattagatcaaaatacaagagaaataaaagattac
gttttacacacagaaataaggaacagatttcctaatgtatggacacataaagatcagctg
ggcaagtttattgtggaacatgttagttcaaaacaaagaagagaattacaagatatagat
tcatccaatagactggaacaagaggaaaaattactacagactatgttaggttttacaaaa
gtatttaggttgttacaagattataataaaatagtggtaggtcataatatgttaacagat
ttaatgttgatgtttgaaaagtttcacaaaccactgccagaatcattcagtgaatttaag
aaagaagttcatcaaatattacctagaatttatgataccaaacatatgtctgctactatc
aggaaggaactagaagaaactggcttattagaatacacctcattacagaaattataccaa
gccttttcaagtgacgtaggtttacaagtggtgttattttcacctgagattcaccatgca
gctggttgtgagagatacataaaaaatgatgtaccacatgaagcaggttttgatgcattt
atgtgtggctcagtctttctctatatagcacatattcttagctgtagaacaatcagatct
acagagattcaagcctgttcatttactgattatgtacctcatctgaagcgatttcttaat
aagataaatattatcagagctacaattaatcatgtgacactggatgggaatgatccaata
tctcaaagaccacagatactatttgtacgtgttaggaaaaatggttttaggctgaaatct
aatcagttggctcaatggttttcatcatatggtacagtggatgttaagttacaaagcaac
aatacagctttggttgcaactggaaattttggttgtgcgcgacaaatattacgatgcttt
aaaggacatgatagaatcgttgtcagtaaatataatgtatggaaacattcccgcctagtt
agagctgtcttatggtcagcagtagttttatcaagtggaatatgtatggtgacattacta
tctagtctcgaaccatcttaa
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