KEGG   Lottia gigantea (owl limpet): LOTGIDRAFT_159336
Entry
LOTGIDRAFT_159336 CDS       T03273                                 
Name
(RefSeq) hypothetical protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
lgi  Lottia gigantea (owl limpet)
Pathway
lgi03022  Basal transcription factors
lgi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lgi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    LOTGIDRAFT_159336
  09124 Replication and repair
   03420 Nucleotide excision repair
    LOTGIDRAFT_159336
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lgi03021]
    LOTGIDRAFT_159336
   03400 DNA repair and recombination proteins [BR:lgi03400]
    LOTGIDRAFT_159336
Transcription machinery [BR:lgi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     LOTGIDRAFT_159336
DNA repair and recombination proteins [BR:lgi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     LOTGIDRAFT_159336
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 20238033
NCBI-ProteinID: XP_009051917
JGI: 159336
UniProt: V4A0H2
LinkDB
Position
Unknown
AA seq 319 aa
MEELRNSSLLVIILDTNPIWWGQNITETGSSVCLSQCLNSLMVFANSHLMLSHYNKLAVI
AAHTNKSCFLYPLPKPPTAGNTTTVNDNDTTEGGEENAVKIPQMGENDGKYELFTEFNEN
LKTEIKDLILNDRLVGELYSDSLVAGAMSMAMQLDIHRIEKEAPIGENVSSRILVIKGSE
DNAAQYMNFMNAVFTAQKQNTVIDACILDNDSGLLQQACDITGGMYLKIPQISGLLQYLL
WVFLPDPIMRPKLTLPPKVQVDYRAACFCHRNLIDVGYVCSVCLSIFCAFNPICSTCQTT
FKFMGPPKILKKKSKKSAG
NT seq 960 nt   +upstreamnt  +downstreamnt
atggaagaattaagaaatagtagtttattggtaattatacttgataccaatccaatatgg
tggggtcaaaatattacagaaacaggctcatcagtttgtttatcccaatgtctgaattct
ctgatggtttttgccaattcacatctaatgttgagtcattataataaactagcagttata
gctgctcacactaataaaagttgttttctgtatcccttacccaaaccaccgactgcgggt
aatacaactactgttaatgataatgacacaacagagggtggtgaagaaaatgctgttaaa
attccacaaatgggagaaaatgatggaaaatatgaactatttacagaatttaatgaaaat
ttaaagacggaaattaaagatctgattttaaatgatagattagtaggagaactttattct
gactctttagtagctggggctatgtctatggctatgcaattagatatccatagaatagaa
aaagaggctcccattggtgaaaatgtttcatcaagaattttggttattaaaggatctgaa
gacaatgctgctcaatatatgaactttatgaatgctgtatttactgcacagaaacagaat
acagttattgatgcatgtattttggataatgactctggtcttctacagcaggcttgtgat
ataacaggtggaatgtatcttaaaatacctcagatatctggtttactacaatatttactg
tgggtatttttaccagatcctataatgagacctaagttaaccttaccacctaaagttcag
gtagattatagagcagcgtgtttctgtcatcgtaatttaattgatgtaggttatgtttgt
tctgtatgtttgtcaattttctgtgcctttaatcccatctgttctacatgccaaactact
ttcaaatttatgggtccaccaaaaatattgaagaagaaatcaaagaagtcagcaggctga

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